| Dengue Virus Perturbs Mitochondrial Morphodynamics to Dampen Innate Immune Responses L Chatel-Chaix, M Cortese, I Romero-Brey, S Bender, CJ Neufeldt, ... Cell Host & Microbe 20 (3), 342-356, 2016 | 256 | 2016 |
| Comprehensive identification of RNA-binding domains in human cells A Castello, B Fischer, CK Frese, R Horos, AM Alleaume, S Foehr, T Curk, ... Molecular Cell 63 (4), 696-710, 2016 | 581 | 2016 |
| The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease Y Liao, A Castello, B Fischer, S Leicht, S Föehr, CK Frese, C Ragan, ... Cell Reports 16 (5), 1456-1469, 2016 | 141 | 2016 |
| Charakterisierung negativer Regulatoren des Wnt Signalweges mittels eines CRISPR/Cas9 basierten kombinatorischen Screens in murinen intestinalen Organoiden N Rindtorff, J Sauer, T Zhan, I Augustin, H Farin, B Fischer, M Boutros Zeitschrift für Gastroenterologie 54 (08), KV374, 2016 | | 2016 |
| Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila VO Sysoev, B Fischer, CK Frese, I Gupta, J Krijgsveld, MW Hentze, ... Nature Communications 7, 2016 | 152 | 2016 |
| A parser for raw and identification mass-spectrometry data B Fischer, S Neumann, L Gatto, Q Kou | | 2016 |
| A genetic interaction map of cell cycle regulators M Billmann, T Horn, B Fischer, T Sandmann, W Huber, M Boutros Molecular biology of the cell 27 (8), 1397-1407, 2016 | 32 | 2016 |
| Gene expression regulatory networks in Trypanosoma brucei: Insights into the role of the mRNA-binding proteome. S Lueong, C Merce, B Fischer, JD Hoheisel, ED Erben Molecular microbiology, 2016 | 127 | 2016 |
| Comprehensive Identification of RNA-Binding Proteins by RNA Interactome Capture A Castello, R Horos, C Strein, B Fischer, K Eichelbaum, LM Steinmetz, ... Post-Transcriptional Gene Regulation, 131-139, 2016 | 63 | 2016 |
| The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs BM Beckmann, R Horos, B Fischer, A Castello, K Eichelbaum, ... Nature Communications 6, 2015 | 454 | 2015 |
| SomaticSignatures: inferring mutational signatures from single-nucleotide variants JS Gehring, B Fischer, M Lawrence, W Huber Bioinformatics 31 (22), 3673-3675, 2015 | 323 | 2015 |
| Package ‘DmelSGI’ B Fischer, MB Fischer, S BiocStyle, RCB EBImage, ... | | 2015 |
| A combined genetic-proteomic approach identifies residues within Dengue virus NS4B critical for interaction with NS3 and viral replication L Chatel-Chaix, W Fischl, P Scaturro, M Cortese, S Kallis, ... Journal of virology 89 (14), 7170-7186, 2015 | 84 | 2015 |
| A map of directional genetic interactions in a metazoan cell B Fischer, T Sandmann, T Horn, M Billmann, V Chaudhary, W Huber, ... eLife 4, e05464, 2015 | 102 | 2015 |
| Experimental data and documented source code for the paper A Map of Directional Genetic Interactions in a Metazoan Cell Bernd Fischer, Thomas Sandmann, Thomas Horn, Maximilian … B Fischer | | 2015 |
| Protein quality control at the inner nuclear membrane A Khmelinskii, E Blaszczak, M Pantazopoulou, B Fischer, DJ Omnus, ... Nature 516 (7531), 410-413, 2014 | 212 | 2014 |
| Measuring genetic interactions in human cells by RNAi and imaging C Laufer, B Fischer, W Huber, M Boutros Nature Protocols 9 (10), 2341-2353, 2014 | 21 | 2014 |
| Package ‘HD2013SGI’ B Fischer, MB Fischer, S BiocStyle, GNU SystemRequirements, ... | | 2014 |
| h5vc: Scalable nucleotide tallies with HDF5 PT Pyl, J Gehring, B Fischer, W Huber Bioinformatics 30 (10), 1464-1466, 2014 | 7 | 2014 |
| Package ‘RNAinteract’ B Fischer, MB Fischer, ICS Imports RColorBrewer, ... | | 2013 |
| Package ‘rhdf5’ B Fischer, G Pau, MB Fischer | | 2013 |
| The RNA-binding protein repertoire of embryonic stem cells SC Kwon, H Yi, K Eichelbaum, S Föhr, B Fischer, KT You, A Castello, ... Nature structural & molecular biology 20 (9), 1122-1130, 2013 | 506 | 2013 |
| CellH5: a format for data exchange in high-content screening C Sommer, M Held, B Fischer, W Huber, DW Gerlich Bioinformatics 29 (12), 1580-1582, 2013 | 12 | 2013 |
| RNA-binding proteins in Mendelian disease A Castello, B Fischer, MW Hentze, T Preiss Trends in Genetics 29 (5), 318-327, 2013 | 270 | 2013 |
| Properties of isotope patterns and their utility for peptide identification in large‐scale proteomic experiments S Okawa, B Fischer, J Krijgsveld Rapid Communications in Mass Spectrometry 27 (9), 1067-1075, 2013 | 4 | 2013 |
| Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping C Laufer, B Fischer, M Billmann, W Huber, M Boutros Nature methods 10 (5), 427-431, 2013 | 150 | 2013 |
| System-wide identification of RNA-binding proteins by interactome capture A Castello, R Horos, C Strein, B Fischer, K Eichelbaum, LM Steinmetz, ... Nature protocols 8 (3), 491-500, 2013 | 228 | 2013 |
| Package ‘mzR’ B Fischer, S Neumann, L Gatto, MB Fischer, D Rcpp, I Biobase, LT Rcpp, ... Nat Biotechnol 30 (10), 918-20, 2012 | | 2012 |
| A cross-platform toolkit for mass spectrometry and proteomics MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ... Nature Biotechnology 30 (10), 918-920, 2012 | 3164 | 2012 |
| Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins A Castello, B Fischer, K Eichelbaum, R Horos, BM Beckmann, C Strein, ... Cell 149 (6), 1393–1406, 2012 | 2134 | 2012 |
| Package ‘RNAinteractMAPK’ B Fischer, MB Fischer | | 2012 |
| Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi E Axelsson, T Sandmann, T Horn, M Boutros, W Huber, B Fischer BMC bioinformatics 12 (1), 342, 2011 | 20 | 2011 |
| Mapping of signaling networks through synthetic genetic interaction analysis by RNAi T Horn, T Sandmann, B Fischer, E Axelsson, W Huber, M Boutros Nature methods 8 (4), 341-346, 2011 | 209 | 2011 |
| Fully automatic stitching and distortion correction of transmission electron microscope images V Kaynig, B Fischer, E Müller, JM Buhmann Journal of structural biology 171 (2), 163-173, 2010 | 90 | 2010 |
| CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging M Held, MHA Schmitz, B Fischer, T Walter, B Neumann, MH Olma, ... Nature methods 7 (9), 747-754, 2010 | 414 | 2010 |
| Optimal transitions for targeted protein quantification: Best conditioned submatrix selection R Šrámek, B Fischer, E Vicari, P Widmayer International Computing and Combinatorics Conference, 287-296, 2009 | 2 | 2009 |
| Optimal transitions for targeted protein quantification: Best conditioned submatrix selection R Šrámek, B Fischer, E Vicari, P Widmayer International Computing and Combinatorics Conference, 287-296, 2009 | 2 | 2009 |
| Adaptive bandwidth selection for biomarker discovery in mass spectrometry B Fischer, V Roth, JM Buhmann Artificial Intelligence in Medicine 45 (2), 207-214, 2009 | 4 | 2009 |
| A fast SEQUEST cross correlation algorithm JK Eng, B Fischer, J Grossmann, MJ MacCoss Journal of proteome research 7 (10), 4598-4602, 2008 | 290 | 2008 |
| The group-lasso for generalized linear models: uniqueness of solutions and efficient algorithms V Roth, B Fischer Proceedings of the 25th international conference on Machine learning, 848-855, 2008 | 252 | 2008 |
| Probabilistic image registration and anomaly detection by nonlinear warping V Kaynig, B Fischer, JM Buhmann Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on …, 2008 | 25 | 2008 |
| Density Estimation of Initial Conditions for Populations of Dynamical Systems AG Busetto, B Fischer, J Buhmann, UK Cumberland Lodge | | 2008 |
| Time-series alignment by non-negative multiple generalized canonical correlation analysis B Fischer, V Roth, JM Buhmann BMC bioinformatics 8 (10), S4, 2007 | 33 | 2007 |
| A workflow to increase the detection rate of proteins from unsequenced organisms in high‐throughput proteomics experiments J Grossmann, B Fischer, K Baerenfaller, J Owiti, JM Buhmann, ... Proteomics 7 (23), 4245-4254, 2007 | 56 | 2007 |
| PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra FF Roos, R Jacob, J Grossmann, B Fischer, JM Buhmann, W Gruissem, ... Bioinformatics 23 (22), 3016-3023, 2007 | 40 | 2007 |
| The kernelHMM: learning kernel combinations in structured output domains V Roth, B Fischer Joint Pattern Recognition Symposium, 436-445, 2007 | | 2007 |
| Nonnegative cca for audiovisual source separation C Sigg, B Fischer, B Ommer, V Roth, J Buhmann Machine Learning for Signal Processing, 2007 IEEE Workshop on, 253-258, 2007 | 43 | 2007 |
| Fully automatic registration of electron microscopy images with high and low resolution V Kaynig, B Fischer, R Wepf, JM Buhmann Microscopy and Microanalysis 13 (S02), 198-199, 2007 | 12 | 2007 |
| Improved functional prediction of proteins by learning kernel combinations in multilabel settings V Roth, B Fischer BMC bioinformatics 8 (2), S12, 2007 | 35 | 2007 |
| Clustering by affinity propagation SF Walter, B Fischer, JM Buhmann ETH Zurich, 2007 | 15 | 2007 |
| Special Session Fourth International Meeting on Computational Intelligence Methods for Bioinformatics Biostatistics (CIBB 2007)-Time-Series Alignment by Non-negative Multiple … B Fischer, V Roth, JM Buhmann Lecture Notes in Computer Science 4578, 505-511, 2007 | | 2007 |
| Dense stereo by triangular meshing and cross validation P Wey, B Fischer, H Bay, JM Buhmann Joint Pattern Recognition Symposium, 708-717, 2006 | 2 | 2006 |
| Probabilistic de novo peptide sequencing with doubly charged ions H Peter, B Fischer, JM Buhmann Joint Pattern Recognition Symposium, 424-433, 2006 | 1 | 2006 |
| Semi-supervised LC/MS alignment for differential proteomics B Fischer, J Grossmann, V Roth, W Gruissem, S Baginsky, JM Buhmann Bioinformatics 22 (14), e132-e140, 2006 | 96 | 2006 |
| Peptide Assignment Validation: Telling what’s wrong without actually knowing what’s right P Pletscher, B Fischer, JM Buhmann Semester Thesis, 2006 | 2 | 2006 |
| " Complex" statistical clustering models in image analysis and proteomics B Fischer Zürich, 2006 | | 2006 |
| NovoHMM: a hidden Markov model for de novo peptide sequencing B Fischer, V Roth, F Roos, J Grossmann, S Baginsky, P Widmayer, ... Analytical chemistry 77 (22), 7265-7273, 2005 | 229 | 2005 |
| A hidden markov model for de novo peptide sequencing B Fischer, V Roth, JM Buhmann, J Grossmann, S Baginsky, W Gruissem, ... Neural Information Processing Systems 17, 457-464, 2005 | 10 | 2005 |
| Clustering with the connectivity kernel B Fischer, V Roth, JM Buhmann Advances in Neural Information Processing Systems 16, 89-96, 2004 | 113 | 2004 |
| Bagging for path-based clustering B Fischer, JM Buhmann IEEE Transactions on Pattern Analysis and Machine Intelligence 25 (11), 1411 …, 2003 | 287 | 2003 |
| Path-based clustering for grouping of smooth curves and texture segmentation B Fischer, JM Buhmann IEEE Transactions on Pattern Analysis and Machine Intelligence 25 (4), 513-518, 2003 | 292 | 2003 |
| Data resampling for path based clustering B Fischer, JM Buhmann Joint Pattern Recognition Symposium, 206-214, 2002 | 15 | 2002 |
| Path based pairwise data clustering with application to texture segmentation B Fischer, T Zöller, JM Buhmann International Workshop on Energy Minimization Methods in Computer Vision and …, 2001 | 95 | 2001 |
Joachim M. BuhmannETH ZurichVerified email at inf.ethz.ch
