Tanja Kortemme
Tanja Kortemme
Verified email at cgl.ucsf.edu - Homepage
Cited by
Cited by
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing
DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier, KM White, ...
Nature 583 (7816), 459-468, 2020
ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules
A Leaver-Fay, M Tyka, SM Lewis, OF Lange, J Thompson, R Jacak, ...
Methods in enzymology 487, 545-574, 2011
A simple physical model for binding energy hot spots in protein–protein complexes
T Kortemme, D Baker
Proceedings of the National Academy of Sciences 99 (22), 14116-14121, 2002
Helix propensities of the amino acids measured in alanine‐based peptides without helix‐stabilizing side‐chain interactions
A Chakrabartty, T Kortemme, RL Baldwin
Protein Science 3 (5), 843-852, 1994
Global landscape of HIV–human protein complexes
S Jaeger, P Cimermancic, N Gulbahce, JR Johnson, KE McGovern, ...
Nature 481 (7381), 365-370, 2012
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein–protein complexes
T Kortemme, AV Morozov, D Baker
Journal of molecular biology 326 (4), 1239-1259, 2003
Computational alanine scanning of protein-protein interfaces
T Kortemme, DE Kim, D Baker
Science's STKE 2004 (219), pl2-pl2, 2004
Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs
AE Palmer, M Giacomello, T Kortemme, SA Hires, V Lev-Ram, D Baker, ...
Chemistry & biology 13 (5), 521-530, 2006
The Rosetta all-atom energy function for macromolecular modeling and design
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 13 (6), 3031-3048, 2017
Ionization− reactivity relationships for cysteine thiols in polypeptides
G Bulaj, T Kortemme, DP Goldenberg
Biochemistry 37 (25), 8965-8972, 1998
Design of a 20-amino acid, three-stranded β-sheet protein
T Kortemme, M Ramı́rez-Alvarado, L Serrano
Science 281 (5374), 253-256, 1998
Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling
DJ Mandell, EA Coutsias, T Kortemme
Nature methods 6 (8), 551-552, 2009
Aromatic side-chain contribution to far-ultraviolet circular dichroism of helical peptides and its effect on measurement of helix propensities
A Chakrabartty, T Kortemme, S Padmanabhan, RL Baldwin
Biochemistry 32 (21), 5560-5565, 1993
Computational redesign of protein-protein interaction specificity
T Kortemme, LA Joachimiak, AN Bullock, AD Schuler, BL Stoddard, ...
Nature structural & molecular biology 11 (4), 371-379, 2004
Ionisation of Cysteine Residues at the Termini of Model α-Helical Peptides. Relevance to Unusual Thiol pKaValues in Proteins of the Thioredoxin Family
T Kortemme, TE Creighton
Journal of molecular biology 253 (5), 799-812, 1995
Design, activity, and structure of a highly specific artificial endonuclease
BS Chevalier, T Kortemme, MS Chadsey, D Baker, RJ Monnat Jr, ...
Molecular cell 10 (4), 895-905, 2002
Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction
CA Smith, T Kortemme
Journal of molecular biology 380 (4), 742-756, 2008
The global phosphorylation landscape of SARS-CoV-2 infection
M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ...
Cell 182 (3), 685-712. e19, 2020
Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations
AV Morozov, T Kortemme, K Tsemekhman, D Baker
Proceedings of the National Academy of Sciences 101 (18), 6946-6951, 2004
Computational design of protein–protein interactions
T Kortemme, D Baker
Current opinion in chemical biology 8 (1), 91-97, 2004
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