| Automated classification of tailed bacteriophages according to their neck organization A Lopes, P Tavares, MA Petit, R Guérois, S Zinn-Justin BMC genomics 15, 1-17, 2014 | 185 | 2014 |
| Detection of novel recombinases in bacteriophage genomes unveils Rad52, Rad51 and Gp2. 5 remote homologs A Lopes, J Amarir-Bouhram, G Faure, MA Petit, R Guerois Nucleic acids research 38 (12), 3952-3962, 2010 | 131 | 2010 |
| Computational sidechain placement and protein mutagenesis with implicit solvent models A Lopes, A Alexandrov, C Bathelt, G Archontis, T Simonson Proteins: Structure, Function, and Bioinformatics 67 (4), 853-867, 2007 | 72 | 2007 |
| Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information A Lopes, S Sacquin-Mora, V Dimitrova, E Laine, Y Ponty, A Carbone PLoS computational biology 9 (12), e1003369, 2013 | 58 | 2013 |
| Universal positions in globular proteins: From observation to simulation N Papandreou, IN Berezovsky, A Lopes, E Eliopoulos, J Chomilier European journal of biochemistry 271 (23‐24), 4762-4768, 2004 | 49 | 2004 |
| Computational protein design: the Proteus software and selected applications T Simonson, T Gaillard, D Mignon, M Schmidt am Busch, A Lopes, ... Journal of computational chemistry 34 (28), 2472-2484, 2013 | 45 | 2013 |
| Computational protein design: software implementation, parameter optimization, and performance of a simple model M Schmidt Am Busch, A Lopes, D Mignon, T Simonson Journal of computational chemistry 29 (7), 1092-1102, 2008 | 38 | 2008 |
| Testing the Coulomb/Accessible Surface Area solvent model for protein stability, ligand binding, and protein design MS Am Busch, A Lopes, N Amara, C Bathelt, T Simonson BMC bioinformatics 9, 1-16, 2008 | 35 | 2008 |
| Genetic dissection of Helicobacter pylori AddAB role in homologous recombination S Marsin, A Lopes, A Mathieu, E Dizet, E Orillard, R Guérois, JP Radicella FEMS microbiology letters 311 (1), 44-50, 2010 | 24 | 2010 |
| Intergenic ORFs as elementary structural modules of de novo gene birth and protein evolution C Papadopoulos, I Callebaut, JC Gelly, I Hatin, O Namy, M Renard, ... Genome research 31 (12), 2303-2315, 2021 | 22 | 2021 |
| Computational design of protein–ligand binding: Modifying the specificity of asparaginyl‐tRNA synthetase A Lopes, MSA Busch, T Simonson Journal of computational chemistry 31 (6), 1273-1286, 2010 | 18 | 2010 |
| SURFMAP: a software for mapping in two dimensions protein surface features H Schweke, MH Mucchielli, N Chevrollier, S Gosset, A Lopes Journal of Chemical Information and Modeling 62 (7), 1595-1601, 2022 | 14 | 2022 |
| Lysine-specific acetylated proteome from the archaeon Thermococcus gammatolerans reveals the presence of acetylated histones B Alpha-Bazin, A Gorlas, A Lagorce, D Joulié, JB Boyer, M Dutertre, ... Journal of Proteomics 232, 104044, 2021 | 13 | 2021 |
| Protein interaction energy landscapes are shaped by functional and also non-functional partners H Schweke, MH Mucchielli, S Sacquin-Mora, W Bei, A Lopes Journal of molecular biology 432 (4), 1183-1198, 2020 | 13 | 2020 |
| Meet-U: educating through research immersion N Abdollahi, A Albani, E Anthony, A Baud, M Cardon, R Clerc, ... PLoS computational biology 14 (3), e1005992, 2018 | 6 | 2018 |
| Evolution dirigée de deux aminoacyl-ARNt synthétases: Mise en place et applications d'une méthode de'protein design'. A Lopes Ecole Polytechnique X, 2008 | 6* | 2008 |
| Translation is a key determinant controlling the fate of cytoplasmic long non-coding RNAs S Andjus, U Szachnowski, N Vogt, I Hatin, C Papadopoulos, A Lopes, ... bioRxiv, 2022.05. 25.493276, 2022 | 4 | 2022 |
| Pervasive translation of Xrn1-sensitive unstable long non-coding RNAs in yeast S Andjus, U Szachnowski, V Nicolas, S Gioftsidi, I Hatin, D Cornu, ... RNA, rna. 079903.123, 2024 | 1 | 2024 |
| Genome sequence of PSonyx, a singleton bacteriophage infecting Corynebacterium glutamicum O Rossier, C Labarre, A Lopes, M Auberdiac, K Tambosco, D Delaruelle, ... Microbiology Resource Announcements 13 (2), e01155-23, 2024 | | 2024 |
| DE Novo emerged gene SEarch in Eukaryotes with DENSE P Roginski, A Grandchamp, C Quignot, A Lopes bioRxiv, 2024.01. 30.578014, 2024 | | 2024 |
