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Nils Woetzel
Nils Woetzel
MPI for Developmental Biology
Bestätigte E-Mail-Adresse bei tuebingen.mpg.de
Titel
Zitiert von
Zitiert von
Jahr
Solvent accessible surface area approximations for rapid and accurate protein structure prediction
E Durham, B Dorr, N Woetzel, R Staritzbichler, J Meiler
Journal of molecular modeling 15, 1093-1108, 2009
3382009
bcl:: Cluster: A method for clustering biological molecules coupled with visualization in the Pymol Molecular Graphics System
N Alexander, N Woetzel, J Meiler
2011 IEEE 1st international conference on computational advances in bio and …, 2011
1542011
EM-fold: de novo atomic-detail protein structure determination from medium-resolution density maps
S Lindert, N Alexander, N Wötzel, M Karakaş, PL Stewart, J Meiler
Structure 20 (3), 464-478, 2012
1042012
EM-fold: De novo folding of α-helical proteins guided by intermediate-resolution electron microscopy density maps
S Lindert, R Staritzbichler, N Wötzel, M Karakaş, PL Stewart, J Meiler
Structure 17 (7), 990-1003, 2009
1022009
Simultaneous prediction of protein secondary structure and transmembrane spans
JK Leman, R Mueller, M Karakas, N Woetzel, J Meiler
Proteins: Structure, Function, and Bioinformatics 81 (7), 1127-1140, 2013
842013
A unified hydrophobicity scale for multispan membrane proteins
J Koehler, N Woetzel, R Staritzbichler, CR Sanders, J Meiler
Proteins: Structure, Function, and Bioinformatics 76 (1), 13-29, 2009
672009
BCL::Fold - De Novo Prediction of Complex and Large Protein Topologies by Assembly of Secondary Structure Elements
M Karakaş, N Woetzel, R Staritzbichler, N Alexander, BE Weiner, J Meiler
PLoS One 7 (11), e49240, 2012
602012
BCL:: Score—knowledge based energy potentials for ranking protein models represented by idealized secondary structure elements
N Woetzel, M Karakaş, R Staritzbichler, R Müller, BE Weiner, J Meiler
PloS one 7 (11), e49242, 2012
582012
BCL:: MP-fold: folding membrane proteins through assembly of transmembrane helices
BE Weiner, N Woetzel, M Karakaş, N Alexander, J Meiler
Structure 21 (7), 1107-1117, 2013
512013
BCL:: EM-Fit: rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement
N Woetzel, S Lindert, PL Stewart, J Meiler
Journal of structural biology 175 (3), 264-276, 2011
452011
BCL:: MP‐fold: Membrane protein structure prediction guided by EPR restraints
AW Fischer, NS Alexander, N Woetzel, M Karakas, BE Weiner, J Meiler
Proteins: Structure, Function, and Bioinformatics 83 (11), 1947-1962, 2015
422015
BCL:: Fold—protein topology determination from limited NMR restraints
BE Weiner, N Alexander, LR Akin, N Woetzel, M Karakas, J Meiler
Proteins: Structure, Function, and Bioinformatics 82 (4), 587-595, 2014
312014
Ab initio protein modeling into CryoEM density maps using EM‐Fold
S Lindert, T Hofmann, N Wötzel, M Karakaş, PL Stewart, J Meiler
Biopolymers 97 (9), 669-677, 2012
292012
BCL:: SAXS: GPU accelerated D ebye method for computation of small angle X‐ray scattering profiles
DK Putnam, BE Weiner, N Woetzel, EW Lowe Jr, J Meiler
Proteins: Structure, Function, and Bioinformatics 83 (8), 1500-1512, 2015
182015
BCL::Contact–Low Confidence Fold Recognition Hits Boost Protein Contact Prediction and De Novo Structure Determination
M Karakaş, N Woetzel, J Meiler
Journal of Computational Biology 17 (2), 153-168, 2010
132010
Structure and mechanism of the phage T4 recombination mediator protein UvsY
S Gajewski, MB Waddell, S Vaithiyalingam, A Nourse, Z Li, N Woetzel, ...
Proceedings of the National Academy of Sciences 113 (12), 3275-3280, 2016
122016
GPU-accelerated machine learning techniques enable QSAR modeling of large HTS data
EW Lowe, M Butkiewicz, N Woetzel, J Meiler
2012 IEEE Symposium on Computational Intelligence in Bioinformatics and …, 2012
112012
Poster: GPU-accelerated artificial neural network for QSAR modeling
EW Lowe, N Woetzel, J Meiler
2011 IEEE 1st International Conference on Computational Advances in Bio and …, 2011
42011
Poster: GPU-accelerated rigid body fitting of atomic structures into electron density maps
EW Lowe, N Woetzel, J Meiler
2011 IEEE 1st International Conference on Computational Advances in Bio and …, 2011
22011
A novel approach to de novo protein structure prediction using knowledge based energy functions and experimental restraints
N Wotzel
Vanderbilt University, 2011
12011
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