| Reversing methanogenesis to capture methane for liquid biofuel precursors VWC Soo, MJ McAnulty, A Tripathi, F Zhu, L Zhang, E Hatzakis, PB Smith, ... Microbial cell factories 15, 1-14, 2016 | 138 | 2016 |
| Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isotopically nonstationary metabolic flux analysis MH Abernathy, J Yu, F Ma, M Liberton, J Ungerer, WD Hollinshead, ... Biotechnology for biofuels 10, 1-13, 2017 | 104 | 2017 |
| 13C metabolic flux analysis at a genome-scale S Gopalakrishnan, CD Maranas Metabolic engineering 32, 12-22, 2015 | 95 | 2015 |
| Elucidation of photoautotrophic carbon flux topology in Synechocystis PCC 6803 using genome-scale carbon mapping models S Gopalakrishnan, HB Pakrasi, CD Maranas Metabolic engineering 47, 190-199, 2018 | 53 | 2018 |
| Genome-scale fluxome of Synechococcus elongatus UTEX 2973 using transient 13C-labeling data JI Hendry, S Gopalakrishnan, J Ungerer, HB Pakrasi, YJ Tang, ... Plant physiology 179 (2), 761-769, 2019 | 52 | 2019 |
| Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans H Nazem-Bokaee, S Gopalakrishnan, JG Ferry, TK Wood, CD Maranas Microbial cell factories 15, 1-13, 2016 | 45 | 2016 |
| K-FIT: An accelerated kinetic parameterization algorithm using steady-state fluxomic data S Gopalakrishnan, S Dash, C Maranas Metabolic engineering 61, 197-205, 2020 | 44 | 2020 |
| Methane oxidation by anaerobic archaea for conversion to liquid fuels TJ Mueller, MJ Grisewood, H Nazem-Bokaee, S Gopalakrishnan, JG Ferry, ... Journal of Industrial Microbiology and Biotechnology 42 (3), 391-401, 2015 | 39 | 2015 |
| From Escherichia coli mutant 13C labeling data to a core kinetic model: A kinetic model parameterization pipeline CJ Foster, S Gopalakrishnan, MR Antoniewicz, CD Maranas PLoS computational biology 15 (9), e1007319, 2019 | 32 | 2019 |
| Redistribution of metabolic fluxes in Chlorella protothecoides by variation of media nitrogen concentration S Gopalakrishnan, J Baker, L Kristoffersen, MJ Betenbaugh Metabolic Engineering Communications 2, 124-131, 2015 | 24 | 2015 |
| Achieving metabolic flux analysis for S. cerevisiae at a genome-scale: challenges, requirements, and considerations S Gopalakrishnan, C Maranas Metabolites 5 (3), 521-535, 2015 | 17 | 2015 |
| Metabolic flux analysis reaching genome wide coverage: lessons learned and future perspectives JI Hendry, HV Dinh, C Foster, S Gopalakrishnan, L Wang, CD Maranas Current Opinion in Chemical Engineering 30, 17-25, 2020 | 10 | 2020 |
| Assessing the impact of substrate-level enzyme regulations limiting ethanol titer in Clostridium thermocellum using a core kinetic model C Foster, VS Boorla, S Dash, S Gopalakrishnan, TB Jacobson, DG Olson, ... Metabolic engineering 69, 286-301, 2022 | 9 | 2022 |
| Guidelines for extracting biologically relevant context-specific metabolic models using gene expression data S Gopalakrishnan, CJ Joshi, MÁ Valderrama-Gómez, E Icten, P Rolandi, ... Metabolic Engineering 75, 181-191, 2023 | 8 | 2023 |
| COSMIC-dFBA: A novel multi-scale hybrid framework for bioprocess modeling S Gopalakrishnan, W Johnson, MA Valderrama-Gomez, E Icten, J Tat, ... Metabolic Engineering, 2024 | 1 | 2024 |
| Deciphering Cyanobacterial Phenotypes for Fast Photoautotrophic Growth M Abernathy, J Yu, F Ma, M Liberton, J Ungerer, WD Hollinshead, ... 2017 AIChE Annual Meeting, 2017 | | 2017 |
| Cyanobacterial genome-scale carbon mapping models for genome-scale 13C-metabolic flux elucidation S Gopalakrishnan, C Maranas ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 253, 2017 | | 2017 |
| Genome-scale mapping models and algorithms for stationary and instationary MFA-based metabolic flux elucidation S Gopalakrishnan, CD Maranas | | 2017 |
| A hierarchy of modeling frameworks for cyanobacterial metabolism: From gsms to ME models T Mueller, S Gopalakrishnan, M Simons, HB Pakrasi, CD Maranas 11th Metabolic Engineering Conference 2016, 549-550, 2016 | | 2016 |
| Application of Metabolic Flux Analysis to Understand Metabolic Properties of Eukaryotic Systems S Gopalakrishnan Johns Hopkins University, 2013 | | 2013 |
Costas D. MaranasDonald B. Broughton Professor of Chemical Engineering, Penn State UniversityVerified email at psu.edu
