| Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy Genome research 27 (5), 722-736, 2017 | 4444 | 2017 |
| Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17 (1), 1-14, 2016 | 1739 | 2016 |
| Interactive metagenomic visualization in a Web browser BD Ondov, NH Bergman, AM Phillippy BMC bioinformatics 12 (1), 1-10, 2011 | 1541 | 2011 |
| Reducing assembly complexity of microbial genomes with single-molecule sequencing S Koren, GP Harhay, TPL Smith, JL Bono, DM Harhay, SD Mcvey, ... Genome biology 14 (9), 1-16, 2013 | 411 | 2013 |
| Structure and complexity of a bacterial transcriptome KD Passalacqua, A Varadarajan, BD Ondov, DT Okou, ME Zwick, ... Journal of bacteriology 191 (10), 3203-3211, 2009 | 271 | 2009 |
| Formation and Composition of the Bacillus anthracis Endospore H Liu, NH Bergman, B Thomason, S Shallom, A Hazen, J Crossno, ... Journal of bacteriology 186 (1), 164-178, 2004 | 263 | 2004 |
| Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2 J Arizti-Sanz, CA Freije, AC Stanton, BA Petros, CK Boehm, S Siddiqui, ... Nature communications 11 (1), 5921, 2020 | 192 | 2020 |
| Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications BD Ondov, A Varadarajan, KD Passalacqua, NH Bergman Bioinformatics 24 (23), 2776-2777, 2008 | 149 | 2008 |
| The structural basis for terminator recognition by the Rho transcription termination factor CE Bogden, D Fass, N Bergman, MD Nichols, JM Berger Molecular cell 3 (4), 487-493, 1999 | 149 | 1999 |
| Transcriptional Profiling of the Bacillus anthracis Life Cycle In Vitro and an Implied Model for Regulation of Spore Formation NH Bergman, EC Anderson, EE Swenson, MM Niemeyer, AD Miyoshi, ... Journal of bacteriology 188 (17), 6092-6100, 2006 | 121 | 2006 |
| Transcriptional Profiling of the Bacillus anthracis Life Cycle In Vitro and an Implied Model for Regulation of Spore Formation NH Bergman, EC Anderson, EE Swenson, MM Niemeyer, AD Miyoshi, ... Journal of bacteriology 188 (17), 6092-6100, 2006 | 121 | 2006 |
| Biosynthetic Analysis of the Petrobactin Siderophore Pathway from Bacillusanthracis JY Lee, BK Janes, KD Passalacqua, BF Pfleger, NH Bergman, H Liu, ... Journal of bacteriology 189 (5), 1698-1710, 2007 | 119 | 2007 |
| Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe EP Price, ML Seymour, DS Sarovich, J Latham, SR Wolken, J Mason, ... Emerging infectious diseases 18 (8), 1307, 2012 | 100 | 2012 |
| Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes AB Hall, PA Papathanos, A Sharma, C Cheng, OS Akbari, L Assour, ... Proceedings of the National Academy of Sciences 113 (15), E2114-E2123, 2016 | 94 | 2016 |
| Genomic fluidity: an integrative view of gene diversity within microbial populations AO Kislyuk, B Haegeman, NH Bergman, JS Weitz BMC genomics 12, 1-10, 2011 | 89 | 2011 |
| Transcriptional Profiling of Bacillus anthracis during Infection of Host Macrophages NH Bergman, EC Anderson, EE Swenson, BK Janes, N Fisher, ... Infection and immunity 75 (7), 3434-3444, 2007 | 82 | 2007 |
| Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923 TJ Treangen, RA Maybank, S Enke, MB Friss, LF Diviak, DKR Karaolis, ... Genome announcements 2 (6), e01110-14, 2014 | 67 | 2014 |
| Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names JH Kuhn, KG Andersen, Y Bào, S Bavari, S Becker, RS Bennett, ... Viruses 6 (9), 3663-3682, 2014 | 66 | 2014 |
| Murine Macrophage Transcriptional Responses to Bacillus anthracis Infection and Intoxication NH Bergman, KD Passalacqua, R Gaspard, LM Shetron-Rama, ... Infection and immunity 73 (2), 1069-1080, 2005 | 66 | 2005 |
| Structural and functional analysis of AsbF: origin of the stealth 3, 4-dihydroxybenzoic acid subunit for petrobactin biosynthesis BF Pfleger, Y Kim, TD Nusca, N Maltseva, JY Lee, CM Rath, JB Scaglione, ... Proceedings of the National Academy of Sciences 105 (44), 17133-17138, 2008 | 65 | 2008 |
