| Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming. M Gebser, C Guziolowski, M Ivanchev, T Schaub, A Siegel, S Thiele, ... KR 10, 497-507, 2010 | 98 | 2010 |
| Boolean network identification from perturbation time series data combining dynamics abstraction and logic programming M Ostrowski, L Paulevé, T Schaub, A Siegel, C Guziolowski Biosystems 149, 139-153, 2016 | 51 | 2016 |
| BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks C Guziolowski, A Bourdé, F Moreews, A Siegel BMC genomics 10 (1), 1-11, 2009 | 38 | 2009 |
| Learning Boolean logic models of signaling networks with ASP S Videla, C Guziolowski, F Eduati, S Thiele, M Gebser, J Nicolas, ... Theoretical Computer Science 599, 79-101, 2015 | 34 | 2015 |
| Revisiting the training of logic models of protein signaling networks with ASP S Videla, C Guziolowski, F Eduati, S Thiele, N Grabe, J Saez-Rodriguez, ... Computational Methods in Systems Biology: 10th International Conference …, 2012 | 23 | 2012 |
| Inferring the role of transcription factors in regulatory networks P Veber, C Guziolowski, M Le Borgne, O Radulescu, A Siegel BMC bioinformatics 9 (1), 1-21, 2008 | 20 | 2008 |
| caspo: a toolbox for automated reasoning on the response of logical signaling networks families S Videla, J Saez-Rodriguez, C Guziolowski, A Siegel Bioinformatics 33 (6), 947-950, 2017 | 17 | 2017 |
| Automatic generation of causal networks linking growth factor stimuli to functional cell state changes C Guziolowski, A Kittas, F Dittmann, N Grabe The FEBS journal 279 (18), 3462-3474, 2012 | 17 | 2012 |
| JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow M Latorre, H Silva, J Saba, C Guziolowski, P Vizoso, V Martinez, ... Bmc Bioinformatics 7, 1-11, 2006 | 14 | 2006 |
| Checking consistency between expression data and large scale regulatory networks: A case study C Guziolowski, P Veber, M Le Borgne, O Radulescu, A Siegel ournal of Biological Physics and Chemistry 7, 37-43, 2007 | 13 | 2007 |
| Directed random walks and constraint programming reveal active pathways in hepatocyte growth factor signaling A Kittas, A Delobelle, S Schmitt, K Breuhahn, C Guziolowski, N Grabe The FEBS Journal 283 (2), 350-360, 2016 | 10 | 2016 |
| Designing experiments to discriminate families of logic models S Videla, I Konokotina, LG Alexopoulos, J Saez-Rodriguez, T Schaub, ... Frontiers in bioengineering and biotechnology 3, 131, 2015 | 10 | 2015 |
| Boolean network identification from multiplex time series data M Ostrowski, L Paulevé, T Schaub, A Siegel, C Guziolowski Computational Methods in Systems Biology: 13th International Conference …, 2015 | 8 | 2015 |
| Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets. C Guziolowski, J Gruel, O Radulescu, A Siegel CIBB, 144-155, 2008 | 4 | 2008 |
| Mapping sequences by parts G Didier, C Guziolowski Algorithms for Molecular Biology 2 (1), 1-15, 2007 | 4 | 2007 |
| Designing logical rules to model the response of biomolecular networks with complex interactions: an application to cancer modeling C Guziolowski, S Blachon, T Baumuratova, G Stoll, O Radulescu, A Siegel IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (5 …, 2010 | 3 | 2010 |
| Systems biology SITCON project for studying Ewing sarcoma G Stoll, A Zinovyev, E Novikov, L Martignetti, E Barillot, F Tirode, K Laud, ... Proceedings of the ICSB 2008: Goteborg, Sweden, 2008 | 3 | 2008 |
| Exhaustively characterizing feasible logic models of a signaling network using answer set programming C Guziolowski, S Videla, F Eduati, S Thiele, T Cokelaer, A Siegel, ... Bioinformatics 30 (13), 1942, 2014 | 2 | 2014 |
| Analysis of Large-Scale Biological Networks with Constraint-Based Approaches over Static Models C Guziolowski Université Rennes 1, 2010 | 2 | 2010 |
| Deciphering transcriptional regulations coordinating the response to environmental changes V Acuña, A Aravena, C Guziolowski, D Eveillard, A Siegel, A Maass BMC bioinformatics 17 (1), 1-12, 2016 | 1 | 2016 |
