BioWordVec, improving biomedical word embeddings with subword information and MeSH Y Zhang, Q Chen, Z Yang, H Lin, Z Lu Scientific data 6 (1), 52, 2019 | 427 | 2019 |
Drug–drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths Y Zhang, W Zheng, H Lin, J Wang, Z Yang, M Dumontier Bioinformatics 34 (5), 828-835, 2018 | 166 | 2018 |
A hybrid model based on neural networks for biomedical relation extraction Y Zhang, H Lin, Z Yang, J Wang, S Zhang, Y Sun, L Yang Journal of biomedical informatics 81, 83-92, 2018 | 134 | 2018 |
An attention-based effective neural model for drug-drug interactions extraction W Zheng, H Lin, L Luo, Z Zhao, Z Li, Y Zhang, Z Yang, J Wang BMC bioinformatics 18, 1-11, 2017 | 101 | 2017 |
Neural network-based approaches for biomedical relation classification: a review Y Zhang, H Lin, Z Yang, J Wang, Y Sun, B Xu, Z Zhao Journal of biomedical informatics 99, 103294, 2019 | 75 | 2019 |
Exploring semi-supervised variational autoencoders for biomedical relation extraction Y Zhang, Z Lu Methods 166, 112-119, 2019 | 55 | 2019 |
A graph kernel based on context vectors for extracting drug–drug interactions W Zheng, H Lin, Z Zhao, B Xu, Y Zhang, Z Yang, J Wang Journal of biomedical informatics 61, 34-43, 2016 | 52 | 2016 |
Biomedical event trigger detection by dependency-based word embedding J Wang, J Zhang, Y An, H Lin, Z Yang, Y Zhang, Y Sun BMC medical genomics 9, 123-133, 2016 | 50 | 2016 |
Protein complex prediction in large ontology attributed protein-protein interaction networks Y Zhang, H Lin, Z Yang, J Wang, Y Li, B Xu IEEE/ACM Transactions on Computational Biology and Bioinformatics 10 (3 …, 2013 | 48 | 2013 |
A method for predicting protein complex in dynamic PPI networks Y Zhang, H Lin, Z Yang, J Wang, Y Liu, S Sang BMC bioinformatics 17, 533-543, 2016 | 37 | 2016 |
An effective neural model extracting document level chemical-induced disease relations from biomedical literature W Zheng, H Lin, Z Li, X Liu, Z Li, B Xu, Y Zhang, Z Yang, J Wang Journal of biomedical informatics 83, 1-9, 2018 | 36 | 2018 |
Neighborhood hash graph kernel for protein–protein interaction extraction Y Zhang, H Lin, Z Yang, Y Li Journal of biomedical informatics 44 (6), 1086-1092, 2011 | 35 | 2011 |
A multi-view network for real-time emotion recognition in conversations H Ma, J Wang, H Lin, X Pan, Y Zhang, Z Yang Knowledge-Based Systems 236, 107751, 2022 | 33 | 2022 |
Construction of dynamic probabilistic protein interaction networks for protein complex identification Y Zhang, H Lin, Z Yang, J Wang BMC bioinformatics 17, 1-13, 2016 | 31 | 2016 |
A single kernel-based approach to extract drug-drug interactions from biomedical literature Y Zhang, H Lin, Z Yang, J Wang, Y Li PloS one 7 (11), e48901, 2012 | 31 | 2012 |
Adverse drug reaction detection via a multihop self-attention mechanism T Zhang, H Lin, Y Ren, L Yang, B Xu, Z Yang, J Wang, Y Zhang BMC bioinformatics 20, 1-11, 2019 | 30 | 2019 |
Protein complexes identification based on go attributed network embedding B Xu, K Li, W Zheng, X Liu, Y Zhang, Z Zhao, Z He BMC bioinformatics 19, 1-10, 2018 | 28 | 2018 |
Extracting drug–drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network D Zhao, J Wang, H Lin, Z Yang, Y Zhang Journal of Biomedical Informatics 99, 103295, 2019 | 27 | 2019 |
Chemical–protein interaction extraction via contextualized word representations and multihead attention Y Zhang, H Lin, Z Yang, J Wang, Y Sun Database 2019, baz054, 2019 | 23 | 2019 |
Construction of ontology augmented networks for protein complex prediction Y Zhang, H Lin, Z Yang, J Wang PloS one 8 (5), e62077, 2013 | 23 | 2013 |