Jonas S Almeida

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	All	Since 2016
Citations	9945	3022
h-index	52	26
i10-index	124	67

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Co-authors

Susana VingaINESC-ID, Instituto Superior Técnico, Universidade de LisboaVerified email at tecnico.ulisboa.pt
João André CarriçobioMérieux Industry and Researcher, Faculty of Medicine, University of LisbonVerified email at fm.ul.pt
Manuel CarrondoiBETVerified email at ibet.pt
Eberhard VoitProfessor of Biomedical Engineering, Georgia TechVerified email at bme.gatech.edu
Francisco PintoAssistant Professor, Faculty of Sciences of the University of LisbonVerified email at fc.ul.pt
Helena F. DeusZS AssociatesVerified email at zs.com
Joao XavierFull Faculty Member, Computational and Systems Biology, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Kevin CoombesProfessor of Bioinformatics and Computational Biology, UT M.D. Anderson Cancer CenterVerified email at osu.edu
Mario RamirezProfessor of Microbiology, Faculdade de Medicina, Universidade de Lisboa, PortugalVerified email at fm.ul.pt
Sara SilvaPrincipal Investigator, LASIGE, Departamento de Informática, Faculdade de Ciências, Universidade deVerified email at fc.ul.pt
Yuliya KarpievitchAI & Data Analyst, BiostatisticianVerified email at telethonkids.org.au
Nelson FrazaoInstituto Gulbenkian de CiênciaVerified email at igc.gulbenkian.pt
Alexander GruenebergResearch Scholar, Department of Epidemiology and Biostatistics, Michigan State UniversityVerified email at msu.edu
Lidia M D GonçalvesPrincipal Investigator, Faculty of Pharmacy, UL, iMed.ULVerified email at ff.ulisboa.pt
Ana RamosUniversidade Nova de LisboaVerified email at fct.pt
Wolfgang MaassProfessor of Business Informatics, Saarland UniversityVerified email at iss.uni-saarland.de
Oliver BoglerNational Cancer InstituteVerified email at nih.gov
Pedro E. CruzAssistant Professor, Universidade AtlânticaVerified email at ecbio.com
Dr. Chuming ChenResearch Associate Professor, University of DelawareVerified email at dbi.udel.edu
Diogo F. T. VeigaComputational Scientist at The Jackson Laboratory for Genomic MedicineVerified email at jax.org

Jonas S Almeida

Division of Cancer Epidemiology and Genetics

Verified email at nih.gov - Homepage

Data Science&Engineering


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Alignment-free sequence comparison—a review S Vinga, J Almeida Bioinformatics 19 (4), 513-523, 2003	869	2003
Effect of hydrogen sulfide on growth of sulfate reducing bacteria MAM Reis, JS Almeida, PC Lemos, MJT Carrondo Biotechnology and bioengineering 40 (5), 593-600, 1992	400	1992
Influence of furfural on anaerobic glycolytic kinetics of Saccharomyces cerevisiae in batch culture E Palmqvist, JS Almeida, B Hahn‐Hägerdal Biotechnology and bioengineering 62 (4), 447-454, 1999	374	1999
Decoupling dynamical systems for pathway identification from metabolic profiles EO Voit, J Almeida Bioinformatics 20 (11), 1670-1681, 2004	349	2004
Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes JA Carriço, C Silva-Costa, J Melo-Cristino, FR Pinto, H De Lencastre, ... Journal of clinical microbiology 44 (7), 2524-2532, 2006	315	2006
GPLAB-a genetic programming toolbox for MATLAB S Silva, J Almeida Proceedings of the Nordic MATLAB conference, 273-278, 2003	286	2003
Urine biomarkers predict the cause of glomerular disease SA Varghese, TB Powell, MN Budisavljevic, JC Oates, JR Raymond, ... Journal of the American Society of Nephrology 18 (3), 913-922, 2007	266	2007
Predictive non-linear modeling of complex data by artificial neural networks JS Almeida Current opinion in biotechnology 13 (1), 72-76, 2002	243	2002
Analysis of genomic sequences by Chaos Game Representation JS Almeida, JA Carrico, A Maretzek, PA Noble, M Fletcher Bioinformatics 17 (5), 429-437, 2001	235	2001
Nitrite inhibition of denitrification by Pseudomonas fluorescens JS Almeida, SM Julio, MAM Reis, MJT Carrondo Biotechnology and bioengineering 46 (3), 194-201, 1995	223	1995
Alignment-free sequence comparison: benefits, applications, and tools A Zielezinski, S Vinga, J Almeida, WM Karlowski Genome biology 18 (1), 1-17, 2017	213	2017
Competition between nitrate and nitrite reduction in denitrification by Pseudomonas fluorescens JS Almeida, MAM Reis, MJT Carrondo Biotechnology and Bioengineering 46 (5), 476-484, 1995	204	1995
From XML to RDF: how semantic web technologies will change the design of'omic'standards X Wang, R Gorlitsky, JS Almeida Nature biotechnology 23 (9), 1099-1103, 2005	197	2005
Analysis of a marine phototrophic biofilm by confocal laser scanning microscopy using the new image quantification software PHLIP LN Mueller, JFC De Brouwer, JS Almeida, LJ Stal, JB Xavier BMC ecology 6 (1), 1-15, 2006	154	2006
Autoinducer 2 production by Streptococcus gordonii DL1 and the biofilm phenotype of a luxS mutant are influenced by nutritional conditions DS Blehert, RJ Palmer, JB Xavier, JS Almeida, PE Kolenbrander Journal of bacteriology 185 (16), 4851-4860, 2003	146	2003
In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis AR Neves, A Ramos, MC Nunes, M Kleerebezem, J Hugenholtz, ... Biotechnology and bioengineering 64 (2), 200-212, 1999	141	1999
Effect of the seven-valent conjugate pneumococcal vaccine on carriage and drug resistance of Streptococcus pneumoniae in healthy children attending day-care centers in Lisbon N Frazão, A Brito-Avô, C Simas, J Saldanha, R Mato, S Nunes, NG Sousa, ... The Pediatric infectious disease journal 24 (3), 243-252, 2005	140	2005
Assessment of band-based similarity coefficients for automatic type and subtype classification of microbial isolates analyzed by pulsed-field gel electrophoresis JA Carrico, FR Pinto, C Simas, S Nunes, NG Sousa, N Frazao, ... Journal of Clinical Microbiology 43 (11), 5483-5490, 2005	136	2005
Molecular characterization of methicillin-resistant Staphylococcus epidermidis clones: evidence of geographic dissemination M Miragaia, I Couto, SFF Pereira, KG Kristinsson, H Westh, JO Jarløv, ... Journal of Clinical Microbiology 40 (2), 430-438, 2002	127	2002
Insights into the immune transcriptome of the shrimp Litopenaeus vannamei: tissue-specific expression profiles and transcriptomic responses to immune challenge J Robalino, JS Almeida, D McKillen, J Colglazier, HF Trent III, YA Chen, ... Physiological genomics 29 (1), 44-56, 2007	123	2007

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