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Virus genomes reveal factors that spread and sustained the Ebola epidemic
G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ...
Nature 544 (7650), 309-315, 2017
4352017
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ...
Science 374 (6566), 423-431, 2021
1852021
Tracking the establishment of local endemic populations of an emergent enteric pathogen
KE Holt, TV Thieu Nga, DP Thanh, H Vinh, DW Kim, MP Vu Tra, ...
Proceedings of the National Academy of Sciences 110 (43), 17522-17527, 2013
1452013
A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentation
H Vinh, NTK Nhu, TVT Nga, PT Duy, JI Campbell, NVM Hoang, MF Boni, ...
BMC infectious diseases 9 (1), 204, 2009
1412009
Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases
A Arias, SJ Watson, D Asogun, EA Tobin, J Lu, MVT Phan, U Jah, ...
Virus Evolution 2 (1), vew016, 2016
1302016
The burden and characteristics of enteric fever at a healthcare facility in a densely populated area of Kathmandu
A Karkey, A Arjyal, KL Anders, MF Boni, S Dongol, S Koirala, MVT Phan, ...
PloS one 5 (11), e13988, 2010
1032010
Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting
M Cotten, V Petrova, MVT Phan, MA Rabaa, SJ Watson, SH Ong, ...
Journal of virology 88 (19), 11056-11069, 2014
972014
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.
H Tegally, JE San, M Cotten, B Tegomoh, G Mboowa, DP Martin, C Baxter, ...
medRxiv, 2022
862022
Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains
MVT Phan, T Ngo Tri, P Hong Anh, S Baker, P Kellam, M Cotten
Virus Evolution 4 (2), vey035, 2018
832018
Virus Metagenomics in Farm Animals: A Systematic Review
KTT Kwok, DF Nieuwenhuijse, MVT Phan, MPG Koopmans
Viruses 12 (1), 107, 2020
732020
A Prospective Multi-Center Observational Study of Children Hospitalized with Diarrhea in Ho Chi Minh City, Vietnam
CN Thompson, MVT Phan, NVM Hoang, P Van Minh, NT Vinh, CT Thuy, ...
The American journal of tropical medicine and hygiene 92 (5), 1045-1052, 2015
732015
Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection
MVT Phan, PH Anh, NV Cuong, BBO Munnink, L van der Hoek, PT My, ...
Virus Evolution 2 (2), vew027, 2016
712016
The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases
MA Rabaa, NT Tue, TM Phuc, J Carrique-Mas, K Saylors, M Cotten, ...
Ecohealth 12 (4), 726-735, 2015
672015
Emergence and spread of a SARS-CoV-2 lineage A variant (A. 23.1) with altered spike protein in Uganda
DL Bugembe, MVT Phan, I Ssewanyana, P Semanda, H Nansumba, ...
Nature microbiology 6 (8), 1094-1101, 2021
662021
The validation and utility of a quantitative one-step multiplex RT real-time PCR targeting rotavirus A and norovirus
TTN Dung, VV Phat, TVT Nga, MVT Phan, PT Duy, JI Campbell, CT Thuy, ...
Journal of virological methods 187 (1), 138-143, 2013
612013
Identification of Possible Virulence Marker from Campylobacter jejuni Isolates
JW Harrison, TTN Dung, F Siddiqui, S Korbrisate, H Bukhari, MPV Tra, ...
Emerging infectious diseases 20 (6), 1026, 2014
552014
Spike protein cleavage-activation mediated by the SARS-CoV-2 P681R mutation: a case-study from its first appearance in variant of interest (VOI) A. 23.1 identified in Uganda
B Lubinski, LE Frazier, MVT Phan, DL Bugembe, T Tang, S Daniel, ...
bioRxiv, 2021.06. 30.450632, 2021
492021
A SARS-CoV-2 lineage A variant (A. 23.1) with altered spike has emerged and is dominating the current Uganda epidemic
DL Bugembe, M VT Phan, I Ssewanyana, P Semanda, H Nansumba, ...
MedRxiv, 2021.02. 08.21251393, 2021
462021
Whole-Genome Next-Generation Sequencing to Study Within-Host Evolution of Norovirus (NoV) Among Immunocompromised Patients With Chronic NoV Infection
J van Beek, M de Graaf, S Smits, CME Schapendonk, GMGM Verjans, ...
The Journal of infectious diseases 216 (12), 1513-1524, 2017
432017
The impact of environmental and climatic variation on the spatiotemporal trends of hospitalized pediatric diarrhea in Ho Chi Minh City, Vietnam
CN Thompson, JL Zelner, TDH Nhu, MVT Phan, PH Le, HN Thanh, ...
Health & Place 35, 147-154, 2015
432015
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