| Virus genomes reveal factors that spread and sustained the Ebola epidemic G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ... Nature 544 (7650), 309-315, 2017 | 436 | 2017 |
| A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ... Science 374 (6566), 423-431, 2021 | 185 | 2021 |
| Tracking the establishment of local endemic populations of an emergent enteric pathogen KE Holt, TV Thieu Nga, DP Thanh, H Vinh, DW Kim, MP Vu Tra, ... Proceedings of the National Academy of Sciences 110 (43), 17522-17527, 2013 | 145 | 2013 |
| A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentation H Vinh, NTK Nhu, TVT Nga, PT Duy, JI Campbell, NVM Hoang, MF Boni, ... BMC infectious diseases 9 (1), 204, 2009 | 141 | 2009 |
| Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases A Arias, SJ Watson, D Asogun, EA Tobin, J Lu, MVT Phan, U Jah, ... Virus Evolution 2 (1), vew016, 2016 | 131 | 2016 |
| The burden and characteristics of enteric fever at a healthcare facility in a densely populated area of Kathmandu A Karkey, A Arjyal, KL Anders, MF Boni, S Dongol, S Koirala, MVT Phan, ... PloS one 5 (11), e13988, 2010 | 103 | 2010 |
| Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting M Cotten, V Petrova, MVT Phan, MA Rabaa, SJ Watson, SH Ong, ... Journal of virology 88 (19), 11056-11069, 2014 | 97 | 2014 |
| The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance. H Tegally, JE San, M Cotten, B Tegomoh, G Mboowa, DP Martin, C Baxter, ... medRxiv, 2022 | 86 | 2022 |
| Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains MVT Phan, T Ngo Tri, P Hong Anh, S Baker, P Kellam, M Cotten Virus Evolution 4 (2), vey035, 2018 | 83 | 2018 |
| Virus Metagenomics in Farm Animals: A Systematic Review KTT Kwok, DF Nieuwenhuijse, MVT Phan, MPG Koopmans Viruses 12 (1), 107, 2020 | 73 | 2020 |
| A Prospective Multi-Center Observational Study of Children Hospitalized with Diarrhea in Ho Chi Minh City, Vietnam CN Thompson, MVT Phan, NVM Hoang, P Van Minh, NT Vinh, CT Thuy, ... The American journal of tropical medicine and hygiene 92 (5), 1045-1052, 2015 | 73 | 2015 |
| Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection MVT Phan, PH Anh, NV Cuong, BBO Munnink, L van der Hoek, PT My, ... Virus Evolution 2 (2), vew027, 2016 | 71 | 2016 |
| The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases MA Rabaa, NT Tue, TM Phuc, J Carrique-Mas, K Saylors, M Cotten, ... Ecohealth 12 (4), 726-735, 2015 | 67 | 2015 |
| Emergence and spread of a SARS-CoV-2 lineage A variant (A. 23.1) with altered spike protein in Uganda DL Bugembe, MVT Phan, I Ssewanyana, P Semanda, H Nansumba, ... Nature microbiology 6 (8), 1094-1101, 2021 | 66 | 2021 |
| The validation and utility of a quantitative one-step multiplex RT real-time PCR targeting rotavirus A and norovirus TTN Dung, VV Phat, TVT Nga, MVT Phan, PT Duy, JI Campbell, CT Thuy, ... Journal of virological methods 187 (1), 138-143, 2013 | 61 | 2013 |
| Identification of Possible Virulence Marker from Campylobacter jejuni Isolates JW Harrison, TTN Dung, F Siddiqui, S Korbrisate, H Bukhari, MPV Tra, ... Emerging infectious diseases 20 (6), 1026, 2014 | 55 | 2014 |
| Spike protein cleavage-activation mediated by the SARS-CoV-2 P681R mutation: a case-study from its first appearance in variant of interest (VOI) A. 23.1 identified in Uganda B Lubinski, LE Frazier, MVT Phan, DL Bugembe, T Tang, S Daniel, ... bioRxiv, 2021.06. 30.450632, 2021 | 50 | 2021 |
| A SARS-CoV-2 lineage A variant (A. 23.1) with altered spike has emerged and is dominating the current Uganda epidemic DL Bugembe, M VT Phan, I Ssewanyana, P Semanda, H Nansumba, ... MedRxiv, 2021.02. 08.21251393, 2021 | 46 | 2021 |
| Setting a baseline for global urban virome surveillance in sewage DF Nieuwenhuijse, BB Oude Munnink, MVT Phan, P Munk, ... Scientific Reports 10 (1), 13748, 2020 | 43 | 2020 |
| Whole-Genome Next-Generation Sequencing to Study Within-Host Evolution of Norovirus (NoV) Among Immunocompromised Patients With Chronic NoV Infection J van Beek, M de Graaf, S Smits, CME Schapendonk, GMGM Verjans, ... The Journal of infectious diseases 216 (12), 1513-1524, 2017 | 43 | 2017 |
Matthew CottenResearch Professor, Complex Adaptive Systems Initiative, Arizona State UniversityVerified email at asu.edu
