| A promoter-level mammalian expression atlas TF Consortium Nature 507 (7493), 462-470, 2014 | 1696 | 2014 |
| HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ... Nucleic acids research 46 (D1), D252-D259, 2018 | 744 | 2018 |
| Effects of cytosine methylation on transcription factor binding sites YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ... BMC Genomics 15 (1), 119, 2014 | 291 | 2014 |
| EpiFactors: a comprehensive database of human epigenetic factors and complexes YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ... Database 2015, bav067, 2015 | 286 | 2015 |
| HOCOMOCO: a comprehensive collection of human transcription factor binding sites models IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ... Nucleic Acids Research 41 (D1), D195-D202, 2013 | 285 | 2013 |
| HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ... Nucleic acids research 44 (D1), D116-D125, 2016 | 254 | 2016 |
| Deep and wide digging for binding motifs in ChIP-Seq data IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev Bioinformatics 26 (20), 2622-2623, 2010 | 185 | 2010 |
| GTRD: an integrated view of transcription regulation S Kolmykov, I Yevshin, M Kulyashov, R Sharipov, Y Kondrakhin, ... Nucleic Acids Research 49 (D1), D104-D111, 2021 | 151 | 2021 |
| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome Research 30 (7), 1060-1072, 2020 | 137 | 2020 |
| Intergenic, gene terminal, and intragenic CpG islands in the human genome Y Medvedeva, M Fridman, N Oparina, D Malko, E Ermakova, ... BMC genomics 11 (1), 48, 2010 | 105 | 2010 |
| Multifaceted deregulation of gene expression and protein synthesis with age AS Anisimova, MB Meerson, MV Gerashchenko, IV Kulakovskiy, ... PNAS 117 (27), 15581-15590, 2020 | 88 | 2020 |
| Jaccard index based similarity measure to compare transcription factor binding site models IE Vorontsov, IV Kulakovskiy, VJ Makeev Algorithms for Molecular Biology 8 (1), 23, 2013 | 82 | 2013 |
| From binding motifs in ChIP-seq data to improved models of transcription factor binding sites I KULAKOVSKIY, V LEVITSKY, D OSHCHEPKOV, L BRYZGALOV, ... Journal of Bioinformatics and Computational Biology, 2013 | 79 | 2013 |
| Architectural proteins Pita, Zw5, and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila N Zolotarev, A Fedotova, O Kyrchanova, A Bonchuk, AA Penin, AS Lando, ... Nucleic acids research 44 (15), 7228-7241, 2016 | 78 | 2016 |
| Landscape of allele-specific transcription factor binding in the human genome S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ... Nature Communications 12 (1), 1-15, 2021 | 69 | 2021 |
| Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal D Papatsenko, H Darr, IV Kulakovskiy, A Waghray, VJ Makeev, ... Stem Cell Reports 5 (2), 207-220, 2015 | 57 | 2015 |
| Highquality genome assembly of Capsella bursapastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution AS Kasianov, AV Klepikova, IV Kulakovskiy, ES Gerasimov, AV Fedotova, ... The Plant Journal 91 (2), 278-291, 2017 | 50 | 2017 |
| Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data VG Levitsky, IV Kulakovskiy, NI Ershov, DY Oshchepkov, VJ Makeev, ... BMC genomics 15 (1), 80, 2014 | 48 | 2014 |
| Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study G Ambrosini, I Vorontsov, D Penzar, R Groux, O Fornes, DD Nikolaeva, ... Genome biology 21, 1-18, 2020 | 45 | 2020 |
| Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay D Shigaki, O Adato, AN Adhikari, S Dong, A HawkinsHooker, F Inoue, ... Human mutation 40 (9), 1280-1291, 2019 | 44 | 2019 |
Vsevolod MakeevCancer Research UK, Manchester在 manchester.ac.uk 的电子邮件经过验证
