| Predicting RNA-protein interactions using only sequence information UK Muppirala, VG Honavar, D Dobbs BMC bioinformatics 12, 1-11, 2011 | 464 | 2011 |
| PlantGDB: a resource for comparative plant genomics J Duvick, A Fu, U Muppirala, M Sabharwal, MD Wilkerson, CJ Lawrence, ... Nucleic acids research 36 (suppl_1), D959-D965, 2007 | 329 | 2007 |
| The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes R Masonbrink, TR Maier, U Muppirala, AS Seetharam, E Lord, PS Juvale, ... BMC genomics 20, 1-14, 2019 | 82 | 2019 |
| Response to persistent ER stress in plants: a multiphasic process that transitions cells from prosurvival activities to cell death R Srivastava, Z Li, G Russo, J Tang, R Bi, U Muppirala, S Chudalayandi, ... The Plant Cell 30 (6), 1220-1242, 2018 | 77 | 2018 |
| Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum A Lanubile, UK Muppirala, AJ Severin, A Marocco, GP Munkvold BMC genomics 16, 1-14, 2015 | 74 | 2015 |
| A Plasmodium‐like virulence effector of the soybean cyst nematode suppresses plant innate immunity JB Noon, M Qi, DN Sill, U Muppirala, S Eves‐van den Akker, TR Maier, ... New Phytologist 212 (2), 444-460, 2016 | 50 | 2016 |
| A simple approach for protein structure discrimination based on the network pattern of conserved hydrophobic residues UK Muppirala, Z Li Protein Engineering, Design and Selection 19 (6), 265-275, 2006 | 48 | 2006 |
| Computational tools for investigating RNA-protein interaction partners U Muppirala, D Dobbs, B Lewis | 39 | 2013 |
| A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data KT Mou, UK Muppirala, AJ Severin, TA Clark, M Boitano, PJ Plummer Frontiers in microbiology 5, 121907, 2015 | 34 | 2015 |
| Molecular modeling of flexible arm‐mediated interactions between bacterial chemoreceptors and their modification enzyme UK Muppirala, S Desensi, TP Lybrand, GL Hazelbauer, Z Li Protein Science 18 (8), 1702-1714, 2009 | 22 | 2009 |
| Transcriptional analysis of phloem-associated cells of potato T Lin, CC Lashbrook, SK Cho, NM Butler, P Sharma, U Muppirala, ... BMC genomics 16, 1-24, 2015 | 21 | 2015 |
| Computational prediction of RNA-protein interactions CM Mann, UK Muppirala, D Dobbs Promoter Associated RNA: Methods and Protocols, 169-185, 2017 | 14 | 2017 |
| Shared data science infrastructure for genomics data H Bagheri, U Muppirala, RE Masonbrink, AJ Severin, H Rajan BMC bioinformatics 20, 1-13, 2019 | 9 | 2019 |
| A motif-based method for predicting interfacial residues in both the RNA and protein components of protein-RNA complexes U Muppirala, BA Lewis, CM Mann, D Dobbs Biocomputing 2016: Proceedings of the Pacific Symposium, 445-455, 2016 | 9 | 2016 |
| Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge C Poussin, L Khachatryan, N Sierro, VK Narsapuram, F Meyer, V Kaikala, ... BMC genomics 23 (1), 624, 2022 | 5 | 2022 |
| Methods for Genome-Wide Methylome Profiling of Campylobacter jejuni KT Mou, TA Clark, UK Muppirala, AJ Severin, PJ Plummer Campylobacter Jejuni: Methods and Protocols, 199-210, 2017 | 2 | 2017 |
| Computational prediction of RNA-protein interaction partners and interfaces U Muppirala | 2 | 2013 |
| The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes T Baum, A Seetharam, U Muppirala, E Lord, P Juvale, A Severin, ... | | 2019 |
| Shared Data Science Infrastructure for Genomics Data H Rajan, H Bagheri, U Muppirala, A Severin, RE Masonbrink | | 2018 |
| Response to Persistent ER Stress in Plants: a Multiphasic Process that Transitions Cells from Prosurvival Activities to Cell Death D Bassham, R Srivastava, Z Li, G Russo, J Tang, A Severin, R Bi, ... | | 2018 |
