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Upendra Kumar Devisetty
Upendra Kumar Devisetty
Head of Data Science
Verified email at greenlightbio.com - Homepage
Title
Cited by
Cited by
Year
Bioconda: sustainable and comprehensive software distribution for the life sciences
JK Björn Grüning, Ryan Dale, Andreas Sjödin, Brad A. Chapman, Jillian Rowe ...
Nature Methods 15, 475–476, 2018
7892018
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
D Koenig, JM Jiménez-Gómez, S Kimura, D Fulop, DH Chitwood, ...
Proceedings of the National Academy of Sciences 110 (28), E2655-E2662, 2013
3832013
Accurate timekeeping is controlled by a cycling activator in Arabidopsis
PY Hsu, UK Devisetty, SL Harmer
Elife 2, e00473, 2013
2102013
Shade avoidance components and pathways in adult plants revealed by phenotypic profiling
K Nozue, AV Tat, U Kumar Devisetty, M Robinson, MR Mumbach, ...
PLoS Genetics 11 (4), e1004953, 2015
1072015
Bringing your tools to CyVerse discovery environment using Docker
UK Devisetty, K Kennedy, P Sarando, N Merchant, E Lyons
F1000Research 5, 2016
392016
Polymorphism Identification and Improved Genome Annotation of Brassica rapa Through Deep RNA Sequencing
UK Devisetty, MF Covington, AV Tat, S Lekkala, JN Maloof
G3: Genes, Genomes, Genetics 4 (11), 2065-2078, 2014
392014
The Divergence of Flowering Time Modulated by FT/TFL1 Is Independent to Their Interaction and Binding Activities
Z Wang, R Yang, UK Devisetty, JN Maloof, Y Zuo, J Li, Y Shen, J Zhao, ...
Frontiers in Plant Science 8, 697, 2017
372017
Modeling development and quantitative trait mapping reveal independent genetic modules for leaf size and shape
RL Baker, WF Leong, MT Brock, RJC Markelz, MF Covington, ...
New Phytologist 208 (1), 257-268, 2015
332015
A genomic analysis of factors driving lincRNA diversification: lessons from plants
ADL Nelson, ES Forsythe, UK Devisetty, DS Clausen, AK Haug-Batzell, ...
G3: Genes, Genomes, Genetics 6 (9), 2881-2891, 2016
322016
Evolinc: a tool for the identification and evolutionary comparison of long intergenic non-coding RNAs
ADL Nelson, UK Devisetty, K Palos, AK Haug-Baltzell, E Lyons, ...
Frontiers in genetics 8, 262149, 2017
292017
The role of a class III gibberellin 2‐oxidase in tomato internode elongation
A Schrager‐Lavelle, NN Gath, UK Devisetty, E Carrera, I López‐Díaz, ...
The Plant Journal 97 (3), 603-615, 2019
282019
Network analysis reveals a role for salicylic acid pathway components in shade avoidance
K Nozue, UK Devisetty, S Lekkala, P Mueller-Moulé, A Bak, CL Casteel, ...
Plant Physiology 178 (4), 1720-1732, 2018
262018
Genetic architecture, biochemical underpinnings and ecological impact of floral UV patterning
MT Brock, LK Lucas, NA Anderson, MJ Rubin, RJ Cody Markelz, ...
Molecular ecology 25 (5), 1122-1140, 2016
262016
Retrograde induction of phyB orchestrates ethylene-auxin hierarchy to regulate growth
J Jiang, Y Xiao, H Chen, W Hu, L Zeng, H Ke, FA Ditengou, U Devisetty, ...
Plant physiology 183 (3), 1268-1280, 2020
242020
Read mapping and transcript assembly: a scalable and high-throughput workflow for the processing and analysis of ribonucleic acid sequencing data
S Peri, A Naron, RL Murphy, E Lyons, UK Devisetty, ADL Nelson
Frontiers in genetics 10, 485433, 2020
242020
The RAD51 and DMC1 homoeologous genes of bread wheat: cloning, molecular characterization and expression analysis
UK Devisetty, K Mayes, S Mayes
BMC Research Notes 3, 1-11, 2010
242010
Genotyping‐by‐sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (Populus tremuloides )
SHS Justin C. Bagley, Neander M. Heming, Eliécer E. Gutiérrez, Upendra K ...
Ecology and Evolution, 2020
172020
A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species
RA Chávez Montes, A Haber, J Pardo, RF Powell, UK Divisetty, AT Silva, ...
Proceedings of the National Academy of Sciences 119 (5), e2118886119, 2022
122022
Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population
RJC Markelz, MF Covington, MT Brock, UK Devisetty, DJ Kliebenstein, ...
G3: Genes, Genomes, Genetics 7 (7), 2259-2270, 2017
112017
RNA-Seq analysis of soft rush (Juncus effusus): transcriptome sequencing, de novo assembly, annotation, and polymorphism identification
M Arslan, UK Devisetty, M Porsch, I Große, JA Müller, SG Michalski
BMC genomics 20, 1-12, 2019
72019
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Articles 1–20