Chris Smillie
Chris Smillie
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TitleCited byYear
Structure, Function and Diversity of Human Microbiome in an Adult Reference Population
Human Microbiome Consortium
Nature. E-pub ahead of print. doi 10, 2012
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
Nature 486, 215-221, 2012
Mobility of plasmids
C Smillie, MP Garcillán-Barcia, MV Francia, EPC Rocha, F de la Cruz
Microbiol. Mol. Biol. Rev. 74 (3), 434-452, 2010
Ecology drives a global network of gene exchange connecting the human microbiome
CS Smillie, MB Smith, J Friedman, OX Cordero, LA David, EJ Alm
Nature 480 (7376), 241-244, 2011
A single-cell survey of the small intestinal epithelium
AL Haber, M Biton, N Rogel, RH Herbst, K Shekhar, C Smillie, G Burgin, ...
Nature 551 (7680), 333-339, 2017
Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease
E Papa, M Docktor, C Smillie, S Weber, SP Preheim, D Gevers, ...
PLoS ONE 7 (6), e39242, 2012
Short-term signatures of evolutionary change in the Salmonella enterica serovar Typhimurium 14028 genome
T Jarvik, C Smillie, EA Groisman, H Ochman
Journal of bacteriology 192 (2), 560-567, 2010
Microbial reprogramming inhibits Western diet-associated obesity
T Poutahidis, M Kleinewietfeld, C Smillie, T Levkovich, A Perrotta, S Bhela, ...
PloS one 8 (7), e68596, 2013
Unraveling the processes shaping mammalian gut microbiomes over evolutionary time
M Groussin, F Mazel, JG Sanders, CS Smillie, S Lavergne, W Thuiller, ...
Nature Communications 8 (1), 1-12, 2017
Mobile genes in the human microbiome are structured from global to individual scales
IL Brito, S Yilmaz, K Huang, L Xu, SD Jupiter, AP Jenkins, W Naisilisili, ...
Nature 535 (7612), 435-439, 2016
Probiotic bacteria induce a ‘glow of health’
T Levkovich, T Poutahidis, C Smillie, BJ Varian, YM Ibrahim, JR Lakritz, ...
PloS one 8 (1), 2013
Strain tracking reveals the determinants of bacterial engraftment in the human gut following fecal microbiota transplantation
CS Smillie, J Sauk, D Gevers, J Friedman, J Sung, I Youngster, ...
Cell host & microbe 23 (2), 229-240. e5, 2018
Natural bacterial communities serve as quantitative geochemical biosensors
MB Smith, AM Rocha, CS Smillie, SW Olesen, C Paradis, L Wu, ...
MBio 6 (3), e00326-15, 2015
T helper cell cytokines modulate intestinal stem cell renewal and differentiation
M Biton, AL Haber, N Rogel, G Burgin, S Beyaz, A Schnell, O Ashenberg, ...
Cell 175 (5), 1307-1320. e22, 2018
Two dynamic regimes in the human gut microbiome
SM Gibbons, SM Kearney, CS Smillie, EJ Alm
PLoS computational biology 13 (2), e1005364, 2017
Intra-and inter-cellular rewiring of the human colon during ulcerative colitis
CS Smillie, M Biton, J Ordovas-Montanes, KM Sullivan, G Burgin, ...
Cell 178 (3), 714-730. e22, 2019
Metagenomic mining of regulatory elements enables programmable species-selective gene expression
NI Johns, ALC Gomes, SS Yim, A Yang, T Blazejewski, CS Smillie, ...
Nature methods 15 (5), 323, 2018
Gene decay in archaea
MWJ Van Passel, CS Smillie, H Ochman
Archaea 2 (2), 137-143, 2007
Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis
CS Smillie, M Biton, J Ordovas-Montanes, KM Sullivan, G Burgin, ...
BioRxiv, 455451, 2019
The enteric nervous system of the human and mouse colon at a single-cell resolution
E Drokhlyansky, CS Smillie, N Van Wittenberghe, M Ericsson, GK Griffin, ...
bioRxiv, 746743, 2019
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