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Lars Schäfer
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Improved parameters for the Martini coarse-grained protein force field
DH de Jong, G Singh, WFD Bennett, C Arnarez, TA Wassenaar, ...
Journal of Chemical Theory and Computation 9 (1), 687-697, 2013
11492013
Polarizable water model for the coarse-grained MARTINI force field
SO Yesylevskyy, LV Schäfer, D Sengupta, SJ Marrink
PLoS Computational Biology 6 (6), e1000810, 2010
8362010
Mechanoenzymatics of titin kinase
EM Puchner, A Alexandrovich, AL Kho, U Hensen, LV Schäfer, ...
Proceedings of the National Academy of Sciences 105 (36), 13385-13390, 2008
3972008
Structure and mechanism of the reversible photoswitch of a fluorescent protein
M Andresen, MC Wahl, AC Stiel, F Gräter, LV Schäfer, S Trowitzsch, ...
Proceedings of the National Academy of Sciences 102 (37), 13070-13074, 2005
3162005
Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes
LV Schäfer, DH de Jong, A Holt, AJ Rzepiela, AH de Vries, B Poolman, ...
Proceedings of the National Academy of Sciences 108 (4), 1343-1348, 2011
2562011
Reconstruction of atomistic details from coarse‐grained structures
AJ Rzepiela, LV Schäfer, N Goga, HJ Risselada, AH de Vries, SJ Marrink
Journal of Computational Chemistry 31 (6), 1333-1343, 2010
2132010
Ultrafast deactivation of an excited cytosine−guanine base pair in DNA
G Groenhof, LV Schäfer, M Boggio-Pasqua, M Goette, H Grubmüller, ...
Journal of the American Chemical Society 129 (21), 6812-6819, 2007
1802007
Mixing MARTINI: electrostatic coupling in hybrid atomistic–coarse-grained biomolecular simulations
TA Wassenaar, HI Ingólfsson, M Prieß, SJ Marrink, LV Schäfer
The Journal of Physical Chemistry B 117 (13), 3516-3530, 2013
1582013
Ultrafast deactivation channel for thymine dimerization
M Boggio-Pasqua, G Groenhof, LV Schäfer, H Grubmüller, MA Robb
Journal of the American Chemical Society 129 (36), 10996-10997, 2007
1522007
Surface hopping excited-state dynamics study of the photoisomerization of a light-driven fluorene molecular rotary motor
A Kazaryan, Z Lan, LV Schäfer, W Thiel, M Filatov
Journal of Chemical Theory and Computation 7 (7), 2189-2199, 2011
1482011
Photoswitching of the fluorescent protein asFP595: mechanism, proton pathways, and absorption spectra
LV Schäfer, G Groenhof, AR Klingen, GM Ullmann, M Boggio‐Pasqua, ...
Angewandte Chemie International Edition 46 (4), 530-536, 2007
1342007
Transmembrane helices can induce domain formation in crowded model membranes
J Domański, SJ Marrink, LV Schäfer
Biochimica et Biophysica Acta (BBA)-Biomembranes 1818 (4), 984-994, 2012
1322012
Cholesterol in bilayers with PUFA chains: doping with DMPC or POPC results in sterol reorientation and membrane-domain formation
N Kucerka, D Marquardt, TA Harroun, MP Nieh, SR Wassall, DH de Jong, ...
Biochemistry 49 (35), 7485-7493, 2010
1282010
Chromophore protonation state controls photoswitching of the fluoroprotein asFP595
LV Schäfer, G Groenhof, M Boggio-Pasqua, MA Robb, H Grubmüller
PLoS Computational Biology 4 (3), e1000034, 2008
1142008
High-concentration protein formulations: how high is high?
P Garidel, AB Kuhn, LV Schäfer, AR Karow-Zwick, M Blech
European Journal of Pharmaceutics and Biopharmaceutics 119, 353-360, 2017
1122017
Understanding the dynamics behind the photoisomerization of a light-driven fluorene molecular rotary motor
A Kazaryan, JCM Kistemaker, LV Schäfer, WR Browne, BL Feringa, ...
The Journal of Physical Chemistry A 114 (15), 5058-5067, 2010
1082010
Influence of hydrophobic mismatch and amino acid composition on the lateral diffusion of transmembrane peptides
S Ramadurai, A Holt, LV Schäfer, VV Krasnikov, DTS Rijkers, SJ Marrink, ...
Biophysical Journal 99 (5), 1447-1454, 2010
1002010
Arginine52 controls the photoisomerization process in photoactive yellow protein
G Groenhof, LV Schäfer, M Boggio-Pasqua, H Grubmüller, MA Robb
Journal of the American Chemical Society 130 (11), 3250-3251, 2008
972008
Partitioning of lipids at domain boundaries in model membranes
LV Schäfer, SJ Marrink
Biophysical Journal 99 (12), L91-L93, 2010
912010
Flooding in GROMACS: accelerated barrier crossings in molecular dynamics
OF Lange, LV Schäfer, H Grubmüller
Journal of Computational Chemistry 27 (14), 1693-1702, 2006
802006
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