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Alex Warwick Vesztrocy
Alex Warwick Vesztrocy
University of Lausanne
Bestätigte E-Mail-Adresse bei warwickvesztrocy.co.uk
Titel
Zitiert von
Zitiert von
Jahr
GOATOOLS: A Python library for Gene Ontology analyses
DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, A Warwick Vesztrocy, ...
Scientific reports 8 (1), 1-17, 2018
7722018
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
3512019
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ...
Nucleic acids research 46 (D1), D477-D485, 2018
2372018
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more
AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ...
Nucleic acids research 49 (D1), D373-D379, 2021
1532021
OMA standalone: orthology inference among public and custom genomes and transcriptomes
AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ...
Genome research 29 (7), 1152-1163, 2019
1122019
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python
K Kaleb, AW Vesztrocy, A Altenhoff, C Dessimoz
F1000Research 8, 2019
162019
Benchmarking gene ontology function predictions using negative annotations
A Warwick Vesztrocy, C Dessimoz
Bioinformatics 36 (Supplement_1), i210-i218, 2020
142020
GOATOOLS: A Python library for Gene Ontology analyses. Sci rep. 2018; 8 (1): 10872
DV Klopfenstein, L Zhang, BS Pedersen, F Ramirez, A Warwick Vesztrocy, ...
112021
GOATOOLS: a Python library for gene ontology analyses. Sci Rep. 2018; 8: 10872
DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, A Warwick Vesztrocy, ...
11
Prioritising candidate genes causing QTL using hierarchical orthologous groups
A Warwick Vesztrocy, C Dessimoz, H Redestig
Bioinformatics 34 (17), i612-i619, 2018
102018
A gene ontology tutorial in python
AW Vesztrocy, C Dessimoz
The Gene Ontology Handbook, 221-229, 2017
102017
New genome assembly of the barn owl (Tyto alba alba)
AL Ducrest, S Neuenschwander, E Schmid‐Siegert, M Pagni, C Train, ...
Ecology and evolution 10 (5), 2284-2298, 2020
92020
OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches
V Rossier, A Warwick Vesztrocy, M Robinson-Rechavi, C Dessimoz
Bioinformatics 37 (18), 2866-2873, 2021
62021
GOATOOLS: A Python library for Gene Ontology analyses., 2018, 8
DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, AW Vesztrocy, ...
DOI: https://doi. org/10.1038/s41598-018-28948-z, 10872, 0
6
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem
AM Altenhoff, A Warwick Vesztrocy, C Bernard, CM Train, ...
Nucleic Acids Research 52 (D1), D513-D521, 2024
52024
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python [version 2; peer review: 2 approved]. F1000Res. 2019; 8: 42
K Kaleb, AW Vesztrocy, A Altenhoff
PubMed Abstract| Publisher Full Text| Free Full Text, 0
4
Application-based fault tolerance techniques for sparse matrix solvers
S McIntosh–Smith, R Hunt, J Price, AW Vesztrocy
The International Journal of High Performance Computing Applications …, 2017
32017
Quality assessment of gene repertoire annotations with OMArk
Y Nevers, A Warwick Vesztrocy, V Rossier, CM Train, A Altenhoff, ...
Nature Biotechnology, 1-10, 2024
12024
Corrigendum: OMA standalone: orthology inference among public and custom genomes and transcriptomes
AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ...
Genome Research 30 (6), 9382, 2020
12020
Orthology inference at scale with FastOMA
S Majidian, Y Nevers, A Yazdizadeh Kharrazi, A Warwick Vesztrocy, ...
bioRxiv, 2024.01. 29.577392, 2024
2024
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