Rojan Shrestha
Titel
Zitiert von
Zitiert von
Jahr
A probabilistic fragment-based protein structure prediction algorithm
D Simoncini, F Berenger, R Shrestha, KYJ Zhang
PloS one 7 (7), e38799, 2012
522012
Assessing the accuracy of contact predictions in CASP13
R Shrestha, E Fajardo, N Gil, K Fidelis, A Kryshtafovych, B Monastyrskyy, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1058-1068, 2019
432019
Durandal: fast exact clustering of protein decoys
F Berenger, R Shrestha, Y Zhou, D Simoncini, KYJ Zhang
Journal of computational chemistry 33 (4), 471-474, 2012
252012
Entropy-accelerated exact clustering of protein decoys
F Berenger, Y Zhou, R Shrestha, KYJ Zhang
Bioinformatics 27 (7), 939-945, 2011
252011
A fragmentation and reassembly method for ab initio phasing
R Shrestha, KYJ Zhang
Acta Crystallographica Section D: Biological Crystallography 71 (2), 304-312, 2015
222015
Improving fragment quality for de novo structure prediction
R Shrestha, KYJ Zhang
Proteins: Structure, Function, and Bioinformatics 82 (9), 2240-2252, 2014
192014
Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13
JE Fajardo, R Shrestha, N Gil, A Belsom, SN Crivelli, C Czaplewski, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1283-1297, 2019
162019
Accelerating ab initio phasing with de novo models
R Shrestha, F Berenger, KYJ Zhang
Acta Crystallographica Section D: Biological Crystallography 67 (9), 804-812, 2011
142011
Computational redesign of PD-1 interface for PD-L1 ligand selectivity
R Shrestha, SC Garrett, SC Almo, A Fiser
Structure 27 (5), 829-836. e3, 2019
82019
Error-estimation-guided rebuilding of de novo models increases the success rate of ab initio phasing
R Shrestha, D Simoncini, KYJ Zhang
Acta Crystallographica Section D: Biological Crystallography 68 (11), 1522-1534, 2012
82012
ModuleSearch: finding functional modules in a protein–protein interaction network
G Cui, R Shrestha, K Han
Computer methods in biomechanics and biomedical engineering 15 (7), 691-699, 2012
52012
Prediction of RNA-binding residues in proteins using the interaction propensities of amino acids and nucleotides
R Shrestha, J Kim, K Han
International Conference on Intelligent Computing, 114-121, 2008
42008
Redesigning HVEM interface for selective binding to LIGHT, BTLA, and CD160
R Shrestha, SC Garrett-Thomson, W Liu, SC Almo, A Fiser
Structure 28 (11), 1197-1205. e2, 2020
32020
The crystal and solution structure of YdiE from Escherichia coli
K Nishimura, C Addy, R Shrestha, ARD Voet, KYJ Zhang, Y Ito, JRH Tame
Acta Crystallographica Section F: Structural Biology Communications 71 (7 …, 2015
22015
Accelerating ab initio phasing with de novo models
KYJ Zhang, R Shrestha, F Berenger
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 67, C591-C591, 2011
22011
Estimating the accuracy of pharmacophore‐based detection of cognate receptor‐ligand pairs in the immunoglobulin superfamily
N Gil, R Shrestha, A Fiser
Proteins: Structure, Function, and Bioinformatics 89 (6), 632-638, 2021
2021
Residue-based pharmacophore approaches to study protein–protein interactions
R Shrestha, JE Fajardo, A Fiser
Current Opinion in Structural Biology 67, 205-211, 2021
2021
Fragger: a protein fragment picker for structura l queries [version 2; peer review: 2 approved]
F Berenger, D Simoncini, A Voet, R Shrestha, KYJ Zhang
2018
Fragger: a protein fragment picker for structural queries
B Francois, D Simoncini, V Arnout, S Rojan
F1000Research 6, 2017
2017
Fragger: a protein fragment picker for structural queries
F Berenger, D Simoncini, A Voet, R Shrestha, KYJ Zhang
F1000Research 6, 2017
2017
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