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Vineeth Surendranath
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Development of human protein reference database as an initial platform for approaching systems biology in humans
S Peri, JD Navarro, R Amanchy, TZ Kristiansen, CK Jonnalagadda, ...
Genome research 13 (10), 2363-2371, 2003
13282003
Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry
CS Ejsing, JL Sampaio, V Surendranath, E Duchoslav, K Ekroos, ...
Proceedings of the National Academy of Sciences 106 (7), 2136-2141, 2009
10652009
Human protein reference database as a discovery resource for proteomics
S Peri, JD Navarro, TZ Kristiansen, R Amanchy, V Surendranath, ...
Nucleic acids research 32 (suppl_1), D497-D501, 2004
7012004
Genome-scale RNAi profiling of cell division in human tissue culture cells
R Kittler, L Pelletier, AK Heninger, M Slabicki, M Theis, L Miroslaw, I Poser, ...
Nature cell biology 9 (12), 1401-1412, 2007
3542007
Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies
R Kittler, V Surendranath, AK Heninger, M Slabicki, M Theis, G Putz, ...
Nature methods 4 (4), 337-344, 2007
2372007
Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectra
D Schwudke, JT Hannich, V Surendranath, V Grimard, T Moehring, ...
Analytical chemistry 79 (11), 4083-4093, 2007
1882007
Directed evolution of a recombinase that excises the provirus of most HIV-1 primary isolates with high specificity
J Karpinski, I Hauber, J Chemnitz, C Schäfer, M Paszkowski-Rogacz, ...
Nature biotechnology 34 (4), 401-409, 2016
1602016
Systematic imaging reveals features and changing localization of mRNAs in Drosophila development
H Jambor, V Surendranath, AT Kalinka, P Mejstrik, S Saalfeld, ...
Elife 4, e05003, 2015
1432015
Sequence similarity‐driven proteomics in organisms with unknown genomes by LC‐MS/MS and automated de novo sequencing
P Waridel, A Frank, H Thomas, V Surendranath, S Sunyaev, P Pevzner, ...
Proteomics 7 (14), 2318-2329, 2007
1232007
Combined RNAi and localization for functionally dissecting long noncoding RNAs
D Chakraborty, D Kappei, M Theis, A Nitzsche, L Ding, ...
Nature methods 9 (4), 360-362, 2012
762012
Vika/vox, a novel efficient and specific Cre/loxP-like site-specific recombination system
M Karimova, J Abi-Ghanem, N Berger, V Surendranath, MT Pisabarro, ...
Nucleic acids research 41 (2), e37-e37, 2013
682013
Revisiting the yeast PPR proteins—application of an iterative hidden Markov model algorithm reveals new members of the rapidly evolving family
KA Lipinski, O Puchta, V Surendranath, M Kudla, P Golik
Molecular biology and evolution 28 (10), 2935-2948, 2011
612011
Dual redundant sequencing strategy: full‐length gene characterisation of 1056 novel and confirmatory HLA alleles
V Albrecht, C Zweiniger, V Surendranath, K Lang, G Schöfl, A Dahl, ...
Hla 90 (2), 79-87, 2017
562017
Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches
N Wielsch, H Thomas, V Surendranath, P Waridel, A Frank, P Pevzner, ...
Journal of proteome research 5 (9), 2448-2456, 2006
522006
Bioinformatics strategies, challenges, and opportunities for next generation sequencing-based HLA genotyping
S Klasberg, V Surendranath, V Lange, G Schöfl
Transfusion Medicine and Hemotherapy 46 (5), 312-325, 2019
502019
Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification
M Junqueira, V Spirin, T Santana Balbuena, P Waridel, V Surendranath, ...
Journal of proteome research 7 (8), 3382-3395, 2008
482008
SeLOX—a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems
V Surendranath, J Chusainow, J Hauber, F Buchholz, BH Habermann
Nucleic acids research 38 (suppl_2), W293-W298, 2010
262010
Designing efficient and specific endoribonuclease-prepared siRNAs
V Surendranath, M Theis, BH Habermann, F Buchholz
siRNA Design: Methods and Protocols, 193-204, 2013
242013
Full-length HLA class I genotyping with the MinION nanopore sequencer
K Lang, V Surendranath, P Quenzel, G Schöfl, AH Schmidt, V Lange
HLA Typing: Methods and Protocols, 155-162, 2018
232018
morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring
I Wagner, M Volkmer, M Sharan, JM Villaveces, F Oswald, ...
BMC bioinformatics 15, 1-11, 2014
122014
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