Nirmalya Bandyopadhyay
Nirmalya Bandyopadhyay
Computational Biologist II, Broad Institute, Cambridge, MA
Verified email at - Homepage
Cited by
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Early innate immunity determines outcome of Mycobacterium tuberculosis pulmonary infection in rabbits
S Subbian, N Bandyopadhyay, L Tsenova, P O’Brien, V Khetani, ...
Cell Communication and Signaling 11 (1), 60, 2013
Deficiency of the novel exopolyphosphatase Rv1026/PPX2 leads to metabolic downshift and altered cell wall permeability in Mycobacterium tuberculosis
YM Chuang, N Bandyopadhyay, D Rifat, H Rubin, JS Bader, ...
MBio 6 (2), 2015
Lesion-specific immune response in granulomas of patients with pulmonary tuberculosis: a pilot study
S Subbian, L Tsenova, MJ Kim, HC Wainwright, A Visser, ...
PLoS One 10 (7), e0132249, 2015
Metabolomic analysis reveals extended metabolic consequences of marginal vitamin B-6 deficiency in healthy human subjects
JF Gregory III, Y Park, Y Lamers, N Bandyopadhyay, YY Chi, K Lee, S Kim, ...
PloS one 8 (6), e63544, 2013
Molecular immunologic correlates of spontaneous latency in a rabbit model of pulmonary tuberculosis
S Subbian, P O'Brien, NL Kushner, G Yang, L Tsenova, B Peixoto, ...
Cell Communication and Signaling 11 (1), 16, 2013
Large-scale chemical–genetics yields new M. tuberculosis inhibitor classes
EO Johnson, E LaVerriere, E Office, M Stanley, E Meyer, T Kawate, ...
Nature 571 (7763), 72-78, 2019
Hypoxia Sensing and Persistence Genes Are Expressed during the Intragranulomatous Survival of Mycobacterium tuberculosis
TA Hudock, TW Foreman, N Bandyopadhyay, US Gautam, AV Veatch, ...
American journal of respiratory cell and molecular biology 56 (5), 637-647, 2017
Pathway-based feature selection algorithm for cancer microarray data
N Bandyopadhyay, T Kahveci, S Goodison, Y Sun, S Ranka
Advances in bioinformatics 2009, 2009
Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination
RP Bhattacharyya, N Bandyopadhyay, P Ma, SS Son, J Liu, LL He, L Wu, ...
Nature medicine 25 (12), 1858-1864, 2019
Systems biology-based identification of Mycobacterium tuberculosis persistence genes in mouse lungs
NK Dutta, N Bandyopadhyay, B Veeramani, G Lamichhane, ...
MBio 5 (1), 2014
Inferring progression models for CGH data
J Liu, N Bandyopadhyay, S Ranka, M Baudis, T Kahveci
Bioinformatics 25 (17), 2208-2215, 2009
HIDEN: Hierarchical decomposition of regulatory networks
G Gülsoy, N Bandhyopadhyay, T Kahveci
BMC bioinformatics 13 (1), 250, 2012
Mucosal infection rewires TNFɑ signaling dynamics to skew susceptibility to recurrence
L Yu, VP O'Brien, J Livny, D Dorsey, N Bandyopadhyay, M Colonna, ...
Elife 8, e46677, 2019
Modeling perturbations using gene networks
N Bandyopadhyay, M Somaiya, T Kahveci, S Ranka
Proc LSS Comput Syst Bioinform Conf, 26-37, 2010
Rapid phenotypic antibiotic susceptibility testing through RNA detection
R Bhattacharyya, J Liu, P Ma, N Bandyopadhyay, J Livny, D Hung
Open Forum Infectious Diseases 4 (suppl_1), S33-S33, 2017
SSLPred: predicting synthetic sickness lethality
N Bandyopadhyay, S Ranka, T Kahveci
Biocomputing 2012, 7-18, 2012
Identifying enzyme knockout strategies on multiple enzyme associations
B Song, E Buyuktahtakin, N Bandyopadhyay, S Ranka, T Kahveci
Bioinformatics–Trends and Methodologies, Intech, Rijeka, 353-370, 2011
Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis
V Betin, C Penaranda, N Bandyopadhyay, R Yang, A Abitua, ...
Scientific reports 9 (1), 1-13, 2019
Identifying differentially regulated genes
N Bandyopadhyay, M Somaiya, S Ranka, T Kahveci
2011 IEEE 1st International Conference on Computational Advances in Bio and …, 2011
A Quantitative, Multiplexed RNA Detection Platform for Rapid Pathogen Identification and Phenotypic Antibiotic Susceptibility Testing (AST) using NanoString Technology
RP Bhattacharyya, R Khafizov, R Boykin, D Dunaway, L Wu, CJ Liu, ...
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