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Meredith Ashby
Meredith Ashby
Caltech, UCSF, Pacific Biosciences
Verified email at pacificbiosciences.com
Title
Cited by
Cited by
Year
Instability of the transcription factor Foxp3 leads to the generation of pathogenic memory T cells in vivo
X Zhou, SL Bailey-Bucktrout, LT Jeker, C Penaranda, ...
Nature immunology 10 (9), 1000-1007, 2009
14692009
The Genome of the Sea Urchin Strongylocentrotus purpuratus
E Sodergren, GM Weinstock, EH Davidson, RA Cameron, RA Gibbs, ...
Science 314 (5801), 941-952, 2006
12452006
The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genome
JV Goldstone, A Hamdoun, BJ Cole, M Howard-Ashby, DW Nebert, ...
Developmental biology 300 (1), 366-384, 2006
2952006
A hybrid approach for the automated finishing of bacterial genomes
A Bashir, AA Klammer, WP Robins, CS Chin, D Webster, E Paxinos, ...
Nature biotechnology 30 (7), 701-707, 2012
2272012
Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus
M Howard-Ashby, SC Materna, CT Brown, L Chen, RA Cameron, ...
Developmental biology 300 (1), 90-107, 2006
1592006
Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development
M Howard-Ashby, SC Materna, CT Brown, L Chen, RA Cameron, ...
Developmental biology 300 (1), 74-89, 2006
1512006
The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development
SC Materna, M Howard-Ashby, RF Gray, EH Davidson
Developmental biology 300 (1), 108-120, 2006
1032006
High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution
M Howard-Ashby, SC Materna, CT Brown, Q Tu, P Oliveri, RA Cameron, ...
Developmental biology 300 (1), 27-34, 2006
632006
The complete methylome of Helicobacter pylori UM032
WC Lee, BP Anton, S Wang, P Baybayan, S Singh, M Ashby, EG Chua, ...
BMC genomics 16, 1-9, 2015
452015
Draft genome sequences of Burkholderia cenocepacia ET12 lineage strains K56-2 and BC7
JJ Varga, L Losada, AM Zelazny, M Kim, J McCorrison, L Brinkac, ...
Genome announcements 1 (5), 10.1128/genomea. 00841-13, 2013
342013
Identification of differentially expressed splice variants by the proteogenomic pipeline splicify
MA Komor, TV Pham, AC Hiemstra, SR Piersma, AS Bolijn, T Schelfhorst, ...
Molecular & Cellular Proteomics 16 (10), 1850-1863, 2017
332017
Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data
JL Gehrig, DM Portik, MD Driscoll, E Jackson, S Chakraborty, D Gratalo, ...
Microbial Genomics 8 (3), 000794, 2022
322022
Comparative genomics reveals the diversity of restriction-modification systems and DNA methylation sites in Listeria monocytogenes
P Chen, HC den Bakker, J Korlach, N Kong, DB Storey, EE Paxinos, ...
Applied and environmental microbiology 83 (3), e02091-16, 2017
312017
The genome of the sea urchin Strongylocentrotus purpuratus
CSUG Sequencing, E Sodergren, GM Weinstock, EH Davidson, ...
Science 314 (5801), 941-952, 2006
222006
Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia
L Tian, Y Shao, S Nance, J Dang, B Xu, X Ma, Y Li, B Ju, L Dong, ...
Nature communications 10 (1), 2789, 2019
192019
Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives
Y Khosravi, V Rehvathy, WY Wee, S Wang, P Baybayan, S Singh, ...
Gut pathogens 5, 1-6, 2013
172013
Multiple genome sequences of Helicobacter pylori strains of diverse disease and antibiotic resistance backgrounds from Malaysia
V Rehvathy, MH Tan, SP Gunaletchumy, X Teh, S Wang, P Baybayan, ...
Genome announcements 1 (5), 10.1128/genomea. 00687-13, 2013
152013
The complete methylome of
WC Lee, BP Anton, S Wang, P Baybayan, S Singh, M Ashby, EG Chua, ...
Helicobacter pylori, 2015
132015
Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity
EG Wilbanks, H Doré, MH Ashby, C Heiner, RJ Roberts, JA Eisen
The ISME journal 16 (8), 1921-1931, 2022
122022
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities
CC Saak, EC Pierce, CB Dinh, D Portik, R Hall, M Ashby, RJ Dutton
Msystems 8 (1), e00701-22, 2023
72023
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