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Kun D. Huang
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The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations
A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ...
Cell host & microbe 26 (5), 666-679. e7, 2019
3242019
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ...
Nature Biotechnology 41 (11), 1633-1644, 2023
2402023
Reconstruction of ancient microbial genomes from the human gut
MC Wibowo, Z Yang, M Borry, A Hübner, KD Huang, BT Tierney, ...
Nature 594 (7862), 234-239, 2021
1752021
The person-to-person transmission landscape of the gut and oral microbiomes
M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ...
Nature 614 (7946), 125-135, 2023
1482023
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
N Karcher, E Pasolli, F Asnicar, KD Huang, A Tett, S Manara, F Armanini, ...
Genome biology 21, 1-27, 2020
832020
Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades
A Kupczok, H Neve, KD Huang, MP Hoeppner, KJ Heller, CMAP Franz, ...
Molecular Biology and Evolution 35 (5), 1147-1159, 2018
742018
Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter
L Granehäll, KD Huang, A Tett, P Manghi, A Paladin, N O’Sullivan, ...
Microbiome 9, 1-18, 2021
292021
Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period
F Maixner, MS Sarhan, KD Huang, A Tett, A Schoenafinger, S Zingale, ...
Current Biology 31 (23), 5149-5162. e6, 2021
272021
Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population
S Manara, M Selma-Royo, KD Huang, F Asnicar, F Armanini, ...
Current Biology 33 (10), 1939-1950. e4, 2023
62023
Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions
A Blanco-Míguez, EJC Gálvez, E Pasolli, F De Filippis, L Amend, ...
Cell Host & Microbe 31 (11), 1804-1819. e9, 2023
52023
MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice
P Manghi, A Blanco-Míguez, S Manara, A NabiNejad, F Cumbo, F Beghini, ...
Cell Reports 42 (5), 2023
42023
Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices
KD Huang, L Amend, EJC Gálvez, TR Lesker, R de Oliveira, A Bielecka, ...
Cell Reports Medicine, 2024
2024
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