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Shibasish Chowdhury
Shibasish Chowdhury
Associate professor of Biological Sciences
Bestätigte E-Mail-Adresse bei pilani.bits-pilani.ac.in
Titel
Zitiert von
Zitiert von
Jahr
A point‐charge force field for molecular mechanics simulations of proteins based on condensed‐phase quantum mechanical calculations
Y Duan, C Wu, S Chowdhury, MC Lee, G Xiong, W Zhang, R Yang, ...
Journal of computational chemistry 24 (16), 1999-2012, 2003
45622003
Ab initio folding simulation of the Trp-cage mini-protein approaches NMR resolution
S Chowdhury, MC Lee, G Xiong, Y Duan
Journal of molecular biology 327 (3), 711-717, 2003
1912003
Characterizing the rate-limiting step of Trp-cage folding by all-atom molecular dynamics simulations
S Chowdhury, MC Lee, Y Duan
The Journal of Physical Chemistry B 108 (36), 13855-13865, 2004
732004
G-quadruplex structure can be stable with only some coordination sites being occupied by cations: a six-nanosecond molecular dynamics study
S Chowdhury, M Bansal
The Journal of Physical Chemistry B 105 (31), 7572-7578, 2001
652001
Breaking non‐native hydrophobic clusters is the rate‐limiting step in the folding of an alanine‐based peptide
S Chowdhury, W Zhang, C Wu, G Xiong, Y Duan
Biopolymers: Original Research on Biomolecules 68 (1), 63-75, 2003
612003
Fs-21 Peptides Can Form Both Single Helix and Helix− Turn− Helix
W Zhang, H Lei, S Chowdhury, Y Duan
The Journal of Physical Chemistry B 108 (22), 7479-7489, 2004
432004
Dysregulated expression but redundant function of the long non-coding RNA HOTAIR in diabetic kidney disease
S Majumder, MJ Hadden, K Thieme, SN Batchu, D Niveditha, ...
Diabetologia 62 (11), 2129-2142, 2019
272019
Denatured-state ensemble and the early-stage folding of the G29A mutant of the B-domain of protein A
S Chowdhury, H Lei, Y Duan
The Journal of Physical Chemistry B 109 (18), 9073-9081, 2005
252005
Effect of coordinated ions on structure and flexibility of parallel G-quadruplexes: a molecular dynamics study
S Chowdhury, M Bansal
Journal of Biomolecular Structure and Dynamics 17 (6), 11-28, 2000
242000
A nanosecond molecular dynamics study of antiparallel d (G) 7 quadruplex structures: effect of the coordinated cations
S Chowdhury, M Bansal
Journal of Biomolecular Structure and Dynamics 18 (5), 647-669, 2001
212001
Novel mutations in the antifolate drug resistance marker genes among Plasmodium vivax isolates exhibiting severe manifestations
S Garg, V Saxena, V Lumb, D Pakalapati, PA Boopathi, AK Subudhi, ...
Experimental Parasitology 132 (4), 410-416, 2012
202012
Autophagy regulated by gain of function mutant p53 enhances proteasomal inhibitor-mediated cell death through induction of ROS and ERK in lung cancer cells
H Saini, I Hakeem, S Mukherjee, S Chowdhury, R Chowdhury
Journal of oncology 2019, 2019
152019
Refined template selection and combination algorithm significantly improves template-based modeling accuracy
A Runthala, S Chowdhury
Journal of Bioinformatics and Computational Biology 17 (02), 1950006, 2019
142019
Modelling studies on neurodegenerative disease-causing triplet repeat sequences d (GGC/GCC) n and d (CAG/CTG) n
S Chowdhury, M Bansal
Journal of biosciences 26 (5), 649-665, 2001
122001
A global transcriptomic pipeline decoding core network of genes involved in stages leading to acquisition of drug-resistance to cisplatin in osteosarcoma cells
D Niveditha, S Mukherjee, S Majumder, R Chowdhury, S Chowdhury
Bioinformatics 35 (10), 1701-1711, 2019
102019
Iterative optimal TM_score and Z_score guided sampling significantly improves model topology
A Runthala, S Chowdhury
International MultiConference of Engineers and Computer Scientists, Hong Kong, 2014
102014
Protein structure prediction: are we there yet?
A Runthala, S Chowdhury
Knowledge-based systems in biomedicine and computational life science, 79-115, 2013
102013
Unsolved problems of ambient computationally intelligent TBM algorithms
A Runthala, S Chowdhury
Hybrid Soft Computing Approaches, 75-105, 2016
82016
In silico analysis of the endonuclease III protein family identifies key residues and processes during evolution
S Kanchan, R Mehrotra, S Chowdhury
Journal of molecular evolution 81 (1), 54-67, 2015
82015
Transcriptomic analysis associated with reversal of cisplatin sensitivity in drug resistant osteosarcoma cells after a drug holiday
D Niveditha, H Sharma, S Majumder, S Mukherjee, R Chowdhury, ...
Bmc Cancer 19 (1), 1-14, 2019
72019
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