Follow
JA Izaguirre
Title
Cited by
Cited by
Year
Langevin stabilization of molecular dynamics
JA Izaguirre, DP Catarello, JM Wozniak, RD Skeel
The Journal of chemical physics 114 (5), 2090-2098, 2001
10972001
CompuCell, a multi-model framework for simulation of morphogenesis
JA Izaguirre, R Chaturvedi, C Huang, T Cickovski, J Coffland, G Thomas, ...
Bioinformatics 20 (7), 1129-1137, 2004
2892004
Longer time steps for molecular dynamics
JA Izaguirre, S Reich, RD Skeel
The Journal of chemical physics 110 (20), 9853-9864, 1999
2501999
An impulse integrator for Langevin dynamics
RD Skeel, JA Izaguirre
Molecular Physics 100 (24), 3885-3891, 2002
1822002
A framework for three-dimensional simulation of morphogenesis
TM Cickovski, C Huang, R Chaturvedi, T Glimm, HGE Hentschel, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (4), 273-288, 2005
1672005
On multiscale approaches to three-dimensional modelling of morphogenesis
R Chaturvedi, C Huang, B Kazmierczak, T Schneider, JA Izaguirre, ...
Journal of the Royal Society interface 2 (3), 237-253, 2005
1582005
A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis
N Chen, JA Glazier, JA Izaguirre, MS Alber
Computer physics communications 176 (11-12), 670-681, 2007
1402007
ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics
T Matthey, T Cickovski, S Hampton, A Ko, Q Ma, M Nyerges, T Raeder, ...
ACM Transactions on Mathematical Software (TOMS) 30 (3), 237-265, 2004
1352004
Shadow hybrid Monte Carlo: an efficient propagator in phase space of macromolecules
JA Izaguirre, SS Hampton
Journal of Computational Physics 200 (2), 581-604, 2004
1242004
Work queue+ python: A framework for scalable scientific ensemble applications
P Bui, D Rajan, B Abdul-Wahid, J Izaguirre, D Thain
Workshop on python for high performance and scientific computing at sc11, 2011
1202011
Verlet-I/r-RESPA/Impulse is limited by nonlinear instabilities
Q Ma, JA Izaguirre, RD Skeel
SIAM Journal on Scientific Computing 24 (6), 1951-1973, 2003
1162003
Predicting protein-protein interactions from protein domains using a set cover approach
C Huang, F Morcos, SP Kanaan, S Wuchty, DZ Chen, JA Izaguirre
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (1), 78-87, 2007
952007
Modeling conformational ensembles of slow functional motions in Pin1-WW
F Morcos, S Chatterjee, CL McClendon, PR Brenner, R López-Rendón, ...
PLoS computational biology 6 (12), e1001015, 2010
882010
From genes to organisms via the cell: a problem-solving environment for multicellular development
T Cickovski, K Aras, M Swat, RMH Merks, T Glimm, HGE Hentschel, ...
Computing in science & engineering 9 (4), 50-60, 2007
772007
Converting a high performance application to an elastic cloud application
D Rajan, A Canino, JA Izaguirre, D Thain
2011 IEEE Third International Conference on Cloud Computing Technology and …, 2011
742011
Accelerating the replica exchange method through an efficient all-pairs exchange
P Brenner, CR Sweet, D VonHandorf, JA Izaguirre
The Journal of chemical physics 126 (7), 2007
672007
BioCoRE: a collaboratory for structural biology
M Bhandarkar, G Budescu, WF Humphrey, JA Izaguirre, S Izrailev, ...
Simulation Series 31, 242-251, 1999
611999
Multiscale dynamics of macromolecules using normal mode Langevin
JA Izaguirre, CR Sweet, VS Pande
Biocomputing 2010, 240-251, 2010
602010
Parallel multigrid summation for the N-body problem
JA Izaguirre, SS Hampton, T Matthey
Journal of Parallel and Distributed Computing 65 (8), 949-962, 2005
552005
A separable shadow Hamiltonian hybrid Monte Carlo method
CR Sweet, SS Hampton, RD Skeel, JA Izaguirre
The Journal of chemical physics 131 (17), 2009
512009
The system can't perform the operation now. Try again later.
Articles 1–20