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Elham Azizi
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Single-cell map of diverse immune phenotypes in the breast tumor microenvironment
E Azizi, AJ Carr, G Plitas, AE Cornish, C Konopacki, S Prabhakaran, ...
Cell, 2018
9832018
The Mycobacterium tuberculosis regulatory network and hypoxia
JE Galagan, K Minch*, M Peterson*, A Lyubetskaya*, E Azizi*, L Sweet*, ...
Nature 499 (7457), 178-183, 2013
4122013
Dirichlet process mixture model for correcting technical variation in single-cell gene expression data
S Prabhakaran*, E Azizi*, A Carr, D Pe’er
Proceedings of The 33rd International Conference on Machine Learning (ICML …, 2016
1022016
Cohesin members Stag1 and Stag2 display distinct roles in chromatin accessibility and topological control of HSC self-renewal and differentiation
AD Viny, RL Bowman, Y Liu, VP Lavallée, SE Eisman, W Xiao, ...
Cell stem cell 25 (5), 682-696. e8, 2019
692019
A gene–environment-induced epigenetic program initiates tumorigenesis
D Alonso-Curbelo, YJ Ho, C Burdziak, JLV Maag, JP Morris, ...
Nature 590 (7847), 642-648, 2021
542021
IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus
S Hemmers, M Schizas, E Azizi, S Dikiy, Y Zhong, Y Feng, G Altan-Bonnet, ...
Journal of Experimental Medicine, 2019
502019
Bayesian inference for single-cell clustering and imputing
E Azizi*, S Prabhakaran*, A Carr, D Pe'er
Genomics and Computational Biology 3 (1), e46-e46, 2017
352017
The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion
R Dekhang, C Wu, KM Smith, TM Lamb, M Peterson, EL Bredeweg, ...
G3: Genes, Genomes, Genetics 7 (1), 129-142, 2017
272017
Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction
ALC Gomes, T Abeel, M Peterson, E Azizi, A Lyubetskaya, L Carvalho, ...
Genome research 24 (10), 1686-1697, 2014
262014
Learning modular structures from network data and node variables
E Azizi, E Airoldi, J Galagan
Proceedings of the 31st International Conference on Machine Learning (ICML …, 2014
132014
A Nonparametric Multi-view Model for Estimating Cell Type-Specific Gene Regulatory Networks
C Burdziak*, E Azizi*, S Prabhakaran, D Pe'er
arXiv preprint arXiv:1902.08138, 2019
82019
Notch3 signaling promotes tumor cell adhesion and progression in a murine epithelial ovarian cancer model
JC Price, E Azizi, LA Naiche, JG Parvani, P Shukla, S Kim, JK Slack-Davis, ...
PloS one 15 (6), e0233962, 2020
72020
Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy
P Bachireddy*, E Azizi*, C Burdziak, VN Nguyen, C Ennis, K Maurer, ...
Cell Reports 37 (6), 2021
62021
Stag1 and Stag2 regulate cell fate decisions in hematopoiesis through non-redundant topological control
AD Viny, RL Bowman, Y Liu, VP Lavallée, SE Eisman, W Xiao, ...
bioRxiv, 581868, 2019
52019
Joint Learning of Modular Structures from Multiple Data Types
E Azizi
NIPS 2013 Workshop: Frontiers of Network Analysis: Methods, Models, and …, 2013
52013
Multi-modal single-cell and whole-genome sequencing of minute, frozen specimens to propel clinical applications
Y Wang, JL Fan, JC Melms, AD Amin, Y Georgis, P Ho, S Tagore, ...
bioRxiv, 2022
22022
Transfer learning framework for cell segmentation with incorporation of geometric features
Y Jin, A Toberoff, E Azizi
LMRL Workshop at NeurIPS 2020, 2020
22020
Dissecting the treatment-naive ecosystem of human melanoma brain metastasis
J Biermann, JC Melms, AD Amin, Y Wang, LA Caprio, A Karz, S Tagore, ...
Cell 185 (14), 2591-2608. e30, 2022
12022
KINOMO: A non-negative matrix factorization framework for recovering intra-and inter-tumoral heterogeneity from single-cell RNA-seq data
S Tagore, Y Wang, J Biermann, R Rabadan, E Azizi, B Izar
bioRxiv, 2022
12022
Selected Papers from the Workshop on Computational Biology: Joint with the International Joint Conference on Artificial Intelligence and the International Conference on Machine …
AB Diallo, EM Nguifo, W Dhifli, E Azizi, S Prabhakaran, W Tansey
J. Comput. Biol. 26 (6), 507-508, 2019
12019
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