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Derek Bickhart
Derek Bickhart
Research Geneticist, USDA ARS
Verified email at ars.usda.gov
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Year
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ...
Nature genetics 49 (4), 643-650, 2017
4792017
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
P Normand, P Lapierre, LS Tisa, JP Gogarten, N Alloisio, E Bagnarol, ...
Genome research 17 (1), 7-15, 2007
3982007
Copy number variation of individual cattle genomes using next-generation sequencing
DM Bickhart, Y Hou, SG Schroeder, C Alkan, MF Cardone, ...
Genome research 22 (4), 778-790, 2012
3162012
De novo assembly of haplotype-resolved genomes with trio binning
S Koren, A Rhie, BP Walenz, AT Dilthey, DM Bickhart, SB Kingan, ...
Nature biotechnology 36 (12), 1174-1182, 2018
2782018
De novo assembly of the cattle reference genome with single-molecule sequencing
BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ...
Gigascience 9 (3), giaa021, 2020
2732020
metaFlye: scalable long-read metagenome assembly using repeat graphs
M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ...
Nature Methods 17 (11), 1103-1110, 2020
2482020
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
O Zhaxybayeva, KS Swithers, P Lapierre, GP Fournier, DM Bickhart, ...
Proceedings of the National Academy of Sciences 106 (14), 5865-5870, 2009
2342009
Genomic characteristics of cattle copy number variations
Y Hou, GE Liu, DM Bickhart, MF Cardone, K Wang, E Kim, LK Matukumalli, ...
BMC genomics 12 (1), 1-11, 2011
2242011
Cattle sex-specific recombination and genetic control from a large pedigree analysis
L Ma, JR O'Connell, PM VanRaden, B Shen, A Padhi, C Sun, DM Bickhart, ...
PLoS genetics 11 (11), e1005387, 2015
1682015
Scaffolding of long read assemblies using long range contact information
J Ghurye, M Pop, S Koren, D Bickhart, CS Chin
BMC genomics 18 (1), 1-11, 2017
1512017
An improved pig reference genome sequence to enable pig genetics and genomics research
A Warr, N Affara, B Aken, H Beiki, DM Bickhart, K Billis, W Chow, L Eory, ...
Gigascience 9 (6), giaa051, 2020
1412020
Genomic signatures reveal new evidences for selection of important traits in domestic cattle
L Xu, DM Bickhart, JB Cole, SG Schroeder, J Song, CPV Tassell, ...
Molecular biology and evolution 32 (3), 711-725, 2015
1392015
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
LR Porto-Neto, TS Sonstegard, GE Liu, DM Bickhart, MVB Da Silva, ...
BMC genomics 14, 1-12, 2013
1352013
Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle
TS Sonstegard, JB Cole, PM VanRaden, CP Van Tassell, DJ Null, ...
PloS one 8 (1), e54872, 2013
1192013
Selecting sequence variants to improve genomic predictions for dairy cattle
PM VanRaden, ME Tooker, JR O’connell, JB Cole, DM Bickhart
Genetics Selection Evolution 49, 1-12, 2017
1172017
Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity
WY Low, R Tearle, DM Bickhart, BD Rosen, SB Kingan, T Swale, ...
Nature communications 10 (1), 260, 2019
1092019
Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle
Y Hou, GE Liu, DM Bickhart, LK Matukumalli, C Li, J Song, LC Gasbarre, ...
Functional & integrative genomics 12, 81-92, 2012
1092012
The challenges and importance of structural variation detection in livestock
DM Bickhart, GE Liu
Frontiers in genetics 5, 37, 2014
1042014
Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3
MC McClure, D Bickhart, D Null, P VanRaden, L Xu, G Wiggans, G Liu, ...
PloS one 9 (3), e92769, 2014
992014
Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
Y Hou, DM Bickhart, ML Hvinden, C Li, J Song, DA Boichard, S Fritz, ...
BMC genomics 13 (1), 1-10, 2012
962012
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