Georgios A. Pavlopoulos

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	All	Since 2015
Citations	3272	2745
h-index	25	23
i10-index	39	35

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20092010201120122013201420152016201720182019202022 37 64 91 132 163 165 196 424 587 743 617

Co-authors

Reinhard SchneiderHead of Bioinformatics Core Facility, Luxembourg Centre for Systems Biomedicine (LCSB), UniversityVerified email at uni.lu
Ioannis IliopoulosAssistant Professor Medical School University of CreteVerified email at med.uoc.gr
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
S KossidaProfessor of BioinformaticsVerified email at igh.cnrs.fr
Nikolas PapanikolaouUniversity of CreteVerified email at uoc.gr
Pantelis BagosProfessor, University of ThessalyVerified email at dib.uth.gr
Theodoros SoldatosVerified email at molecularhealth.com
David Páez-EspinoMammoth BioSciences // DOE-JGIVerified email at lbl.gov
Charalampos MoschopoulosESAT/SISTA KU LeuvenVerified email at esat.kuleuven.be
Natalia IvanovaDOE Joint Genome InstituteVerified email at lbl.gov
THEODOSIOS THEODOSIOUFounder-CEO TETRAKTYS IntelligenceVerified email at tetraktysintel.com
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstituteVerified email at lbl.gov
Venkata P. SatagopamResearch Scientist, LCSB, University of LuxembourgVerified email at uni.lu
Yves MoreauUniversity of LeuvenVerified email at esat.kuleuven.be
Alejandro SifrimLaboratory of Multi-omic Integrative Bioinformatics - Center of Human Genetics - KU LeuvenVerified email at kuleuven.be
Anastasis OulasAssociate Scientist at The Cyprus Institute of Neurology and Genetics (CING)Verified email at cing.ac.cy
Maria SecrierLecturer in Computational Biology, UCL Genetics Institute, University College LondonVerified email at ucl.ac.uk
Neha J VargheseDOE Joint Genome InstituteVerified email at lbl.gov
Evangelos PafilisResearcher C, Hellenic Center Marine Research (HCMR)Verified email at hcmr.gr
Sergey OvchinnikovHarvard FAS Center for Systems BiologyVerified email at fas.harvard.edu

Georgios A. Pavlopoulos

Head of Bioinformatics (Associate Professor), BSRC Alexander Fleming

Verified email at fleming.gr - Homepage

Bioinformatics Genomics Biological Networks Visualization Text-Mining


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Using graph theory to analyze biological networks GA Pavlopoulos, M Secrier, CN Moschopoulos, TG Soldatos, S Kossida, ... BioData mining 4 (1), 10, 2011	506	2011
Uncovering Earth's Virome D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ... Nature, 2016	431	2016
Protein structure determination using metagenome sequence data DB Sergey Ovchinnikov, Hahnbeom Park, Neha Varghese, Po-Ssu Huang, Georgios ... Science 355 (6322), 294-298, 2017	321	2017
Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ... Bioinformatics and biology insights 9, BBI. S12462, 2015	267	2015
A survey of visualization tools for biological network analysis GA Pavlopoulos, AL Wegener, R Schneider Biodata mining 1, 12, 2008	203	2008
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ... Nature biotechnology 35 (7), 676, 2017	147	2017
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ... Nature biotechnology 36 (4), 359, 2018	137	2018
Arena3D: visualization of biological networks in 3D GA Pavlopoulos, S O'Donoghue, V Satagopam, T Soldatos, E Pafilis, ... BMC systems biology 2 (1), 104, 2008	111	2008
IMG/VR: A database of cultured and uncultured DNA Viruses and Retroviruses D Paez-Espino, IMA Chen A, K Palaniappan, A Ratner, K Chu, E Szeto, ... Nucleic Acids Research, 2016	98	2016
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, A Enright, ... GigaScience 4 (38), 2015	74	2015
Protein–protein interaction predictions using text mining methods N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos Methods 74, 47-53, 2015	71	2015
Unraveling genomic variation from next generation sequencing data GA Pavlopoulos, A Oulas, E Iacucci, A Sifrim, Y Moreau, R Schneider, ... BioData Mining 6 (13), 2013	64	2013
A reference guide for tree analysis and visualization GA Pavlopoulos, TG Soldatos, A Barbosa-Silva, R Schneider BioData mining 3 (1), 1, 2010	61	2010
Medusa: A tool for exploring and clustering biological networks GA Pavlopoulos, S Hooper, A Sifrim, R Schneider, J Aerts BMC Research Notes 4 (1), 384, 2011	52	2011
Large-scale analyses of human microbiomes reveal thousands of small, novel genes H Sberro, BJ Fremin, S Zlitni, F Edfors, N Greenfield, MP Snyder, ... Cell 178 (5), 1245-1259. e14, 2019	51	2019
Arena3D: visualizing time-driven phenotypic differences in biological systems M Secrier, GA Pavlopoulos, J Aerts, R Schneider BMC Bioinformatics 13 (1), 45, 2012	44	2012
LAITOR-Literature Assistant for Identification of Terms co-Occurrences and Relationships A Barbosa-Silva, T Soldatos, I Magalhães, GA Pavlopoulos, JF Fontaine, ... BMC bioinformatics 11 (1), 70, 2010	42	2010
HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks A Azad, GA Pavlopoulos, CA Ouzounis, NC Kyrpides, A Buluç Nucleic acids research 46 (6), e33-e33, 2018	39	2018
Non-targeted virus sequence discovery pipeline and virus clustering for metagenomic data D Paez-Espino, GA Pavlopoulos, NN Ivanova, K NC Nature Protocols, 1673–1682, 2017	36	2017
Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease A Sifrim, JKJ Van Houdt, LC Tranchevent, B Nowakowska, R Sakai, ... Genome Medicine 4, 73, 2012	34	2012

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