Georgios A. Pavlopoulos

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	All	Since 2016
Citations	3621	2907
h-index	27	23
i10-index	41	33

780

390

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585

200920102011201220132014201520162017201820192020202121 37 65 92 132 162 166 198 436 595 744 775 148

Co-authors

Reinhard SchneiderHead of Bioinformatics Core Facility, Luxembourg Centre for Systems Biomedicine (LCSB), UniversityVerified email at uni.lu
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Ioannis IliopoulosAssociate Professor Medical School University of CreteVerified email at med.uoc.gr
David Páez-EspinoMammoth BioSciences // DOE-JGIVerified email at lbl.gov
Pantelis BagosProfessor, University of ThessalyVerified email at dib.uth.gr
Nikolas PapanikolaouUniversity of CreteVerified email at uoc.gr
S KossidaProfessor of BioinformaticsVerified email at igh.cnrs.fr
Theodoros SoldatosVerified email at molecularhealth.com
Natalia IvanovaDOE Joint Genome InstituteVerified email at lbl.gov
Charalampos MoschopoulosESAT/SISTA KU LeuvenVerified email at esat.kuleuven.be
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstituteVerified email at lbl.gov
THEODOSIOS THEODOSIOUFounder-CEO TETRAKTYS IntelligenceVerified email at tetraktysintel.com
Neha J VargheseDOE Joint Genome InstituteVerified email at lbl.gov
Venkata P. SatagopamResearch Scientist, LCSB, University of LuxembourgVerified email at uni.lu
Yves MoreauUniversity of LeuvenVerified email at esat.kuleuven.be
Anastasis OulasAssociate Scientist at The Cyprus Institute of Neurology and Genetics (CING)Verified email at cing.ac.cy
Alejandro SifrimLaboratory of Multi-omic Integrative Bioinformatics - Center of Human Genetics - KU LeuvenVerified email at kuleuven.be
Tanja WoykeDOE Joint Genome InstituteVerified email at lbl.gov
Maria SecrierLecturer in Computational Biology, UCL Genetics Institute, University College LondonVerified email at ucl.ac.uk
Evangelos PafilisResearcher C, Hellenic Center Marine Research (HCMR)Verified email at hcmr.gr

Georgios A. Pavlopoulos

Director of Bioinformatics (Research Associate Professor), IFBR - BSRC Fleming

Verified email at fleming.gr - Homepage

Bioinformatics Genomics Biological Networks Visualization Text-Mining


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Using graph theory to analyze biological networks GA Pavlopoulos, M Secrier, CN Moschopoulos, TG Soldatos, S Kossida, ... BioData mining 4 (1), 1-27, 2011	545	2011
Uncovering Earth's Virome D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ... Nature, 2016	485	2016
Protein structure determination using metagenome sequence data DB Sergey Ovchinnikov, Hahnbeom Park, Neha Varghese, Po-Ssu Huang, Georgios ... Science 355 (6322), 294-298, 2017	345	2017
Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ... Bioinformatics and biology insights 9, BBI. S12462, 2015	291	2015
A survey of visualization tools for biological network analysis GA Pavlopoulos, AL Wegener, R Schneider Biodata mining 1, 12, 2008	212	2008
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ... Nature biotechnology 36 (4), 359-367, 2018	174	2018
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ... Nature biotechnology 35 (7), 676, 2017	167	2017
Arena3D: visualization of biological networks in 3D GA Pavlopoulos, S O'Donoghue, V Satagopam, T Soldatos, E Pafilis, ... BMC systems biology 2 (1), 104, 2008	115	2008
IMG/VR: A database of cultured and uncultured DNA Viruses and Retroviruses D Paez-Espino, IMA Chen A, K Palaniappan, A Ratner, K Chu, E Szeto, ... Nucleic Acids Research, 2016	113	2016
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, A Enright, ... GigaScience 4 (38), 2015	77	2015
Protein–protein interaction predictions using text mining methods N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos Methods 74, 47-53, 2015	74	2015
Unraveling genomic variation from next generation sequencing data GA Pavlopoulos, A Oulas, E Iacucci, A Sifrim, Y Moreau, R Schneider, ... BioData Mining 6 (13), 2013	68	2013
A reference guide for tree analysis and visualization GA Pavlopoulos, TG Soldatos, A Barbosa-Silva, R Schneider BioData mining 3 (1), 1-24, 2010	67	2010
Large-scale analyses of human microbiomes reveal thousands of small, novel genes H Sberro, BJ Fremin, S Zlitni, F Edfors, N Greenfield, MP Snyder, ... Cell 178 (5), 1245-1259. e14, 2019	63	2019
Medusa: A tool for exploring and clustering biological networks GA Pavlopoulos, S Hooper, A Sifrim, R Schneider, J Aerts BMC Research Notes 4 (1), 384, 2011	53	2011
Non-targeted virus sequence discovery pipeline and virus clustering for metagenomic data D Paez-Espino, GA Pavlopoulos, NN Ivanova, K NC Nature Protocols, 1673–1682, 2017	52	2017
Arena3D: visualizing time-driven phenotypic differences in biological systems M Secrier, GA Pavlopoulos, J Aerts, R Schneider BMC Bioinformatics 13 (1), 45, 2012	48	2012
HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks A Azad, GA Pavlopoulos, CA Ouzounis, NC Kyrpides, A Buluç Nucleic acids research 46 (6), e33-e33, 2018	47	2018
LAITOR-Literature Assistant for Identification of Terms co-Occurrences and Relationships A Barbosa-Silva, T Soldatos, I Magalhães, GA Pavlopoulos, JF Fontaine, ... BMC bioinformatics 11 (1), 70, 2010	42	2010
Bipartite graphs in systems biology and medicine: a survey of methods and applications GA Pavlopoulos, PI Kontou, A Pavlopoulou, C Bouyioukos, E Markou, ... GigaScience 7 (4), giy014, 2018	39	2018

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