| A global catalog of whole-genome diversity from 233 primate species LFK Kuderna, H Gao, MC Janiak, M Kuhlwilm, JD Orkin, T Bataillon, ... Science 380 (6648), 906-913, 2023 | 53 | 2023 |
| The landscape of tolerated genetic variation in humans and primates H Gao, T Hamp, J Ede, JG Schraiber, J McRae, M Singer-Berk, Y Yang, ... Science 380 (6648), eabn8153, 2023 | 49 | 2023 |
| Evolutionary and biomedical insights from a marmoset diploid genome assembly C Yang, Y Zhou, S Marcus, G Formenti, LA Bergeron, Z Song, X Bi, ... Nature 594 (7862), 227-233, 2021 | 44 | 2021 |
| Inference of directional selection and mutation parameters assuming equilibrium C Vogl, J Bergman Theoretical population biology 106, 71-82, 2015 | 27 | 2015 |
| Does adaptive protein evolution proceed by large or small steps at the amino acid level? J Bergman, A Eyre-Walker Molecular Biology and Evolution 36 (5), 990-998, 2019 | 18 | 2019 |
| Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons EF Sørensen, RA Harris, L Zhang, M Raveendran, LFK Kuderna, ... Science 380 (6648), eabn8153, 2023 | 13 | 2023 |
| Functional traits—not nativeness—shape the effects of large mammalian herbivores on plant communities EJ Lundgren, J Bergman, J Trepel, E le Roux, S Monsarrat, JA Kristensen, ... Science 383 (6682), 531-537, 2024 | 10 | 2024 |
| Inference in population genetics using forward and backward, discrete and continuous time processes J Bergman, D Schrempf, C Kosiol, C Vogl Journal of Theoretical Biology 439, 166-180, 2018 | 10 | 2018 |
| Transcription-Associated Compositional Skews in Drosophila Genes J Bergman, AJ Betancourt, C Vogl Genome Biology and Evolution 10 (1), 269-275, 2018 | 10 | 2018 |
| Eighty million years of rapid evolution of the primate Y chromosome Y Zhou, X Zhan, J Jin, L Zhou, J Bergman, X Li, MMC Rousselle, ... Nature Ecology & Evolution 7 (7), 1114-1130, 2023 | 9 | 2023 |
| Worldwide Late Pleistocene and Early Holocene population declines in extant megafauna are associated with Homo sapiens expansion rather than climate change J Bergman, RØ Pedersen, EJ Lundgren, RT Lemoine, S Monsarrat, ... Nature Communications 14 (1), 7679, 2023 | 8 | 2023 |
| Identification of constrained sequence elements across 239 primate genomes LFK Kuderna, JC Ulirsch, S Rashid, M Ameen, L Sundaram, G Hickey, ... Nature 625 (7996), 735-742, 2024 | 6 | 2024 |
| Population dynamics of GC-changing mutations in humans and great apes J Bergman, M Heide Schierup Genetics 218 (3), iyab083, 2021 | 6 | 2021 |
| Computation of the likelihood of joint site frequency spectra using orthogonal polynomials C Vogl, J Bergman Computation 4 (1), 6, 2016 | 4 | 2016 |
| The late-Quaternary megafauna extinctions: patterns, causes, ecological consequences, and implications for ecosystem management in the Anthropocene JC Svenning, RT Lemoine, J Bergman, R Buitenwerf, E Le Roux, ... Cambridge Prisms: Extinction, 1-68, 2024 | 2 | 2024 |
| Evolutionary dynamics of pseudoautosomal region 1 in humans and great apes J Bergman, MH Schierup Genome Biology 23 (1), 215, 2022 | 2 | 2022 |
| Dominant epistasis between two quantitative trait loci governing sporulation efficiency in yeast Saccharomyces cerevisiae J Bergman, PT Mitrikeski, K Brčić-Kostić Food technology and biotechnology 53 (4), 367, 2015 | 1 | 2015 |
| Inference of genomic landscapes using ordered Hidden Markov Models with emission densities (oHMMed) C Vogl, M Karapetiants, B Yıldırım, H Kjartansdóttir, C Kosiol, J Bergman, ... BMC bioinformatics 25 (1), 151, 2024 | | 2024 |
| Traditional phylogenetic models fail to account for variations in the effective population size R Borges, I Kotari, J Bergman, MA Chase, CF Mugal, C Kosiol bioRxiv, 2022.09. 26.509598, 2022 | | 2022 |
| Worldwide late-Quaternary population declines in extant megafauna are due to Homo sapiens rather than climate J Bergman, RØ Pedersen, EJ Lundgren, RT Lemoine, S Monsarrat, ... bioRxiv, 2022.08. 13.503826, 2022 | | 2022 |
