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Teemu Kivioja
Teemu Kivioja
Bestätigte E-Mail-Adresse bei helsinki.fi
Titel
Zitiert von
Zitiert von
Jahr
DNA-binding specificities of human transcription factors
A Jolma, J Yan, T Whitington, J Toivonen, KR Nitta, P Rastas, ...
Cell 152 (1), 327-339, 2013
13452013
Counting absolute numbers of molecules using unique molecular identifiers
T Kivioja, A Vähärautio, K Karlsson, M Bonke, M Enge, S Linnarsson, ...
Nature methods 9 (1), 72-74, 2012
11842012
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Y Yin, E Morgunova, A Jolma, E Kaasinen, B Sahu, S Khund-Sayeed, ...
Science 356 (6337), eaaj2239, 2017
10832017
Genome‐wide analysis of ETS‐family DNA‐binding in vitro and in vivo
GH Wei, G Badis, MF Berger, T Kivioja, K Palin, M Enge, M Bonke, ...
The EMBO journal 29 (13), 2147-2160, 2010
6542010
The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling
S Tuupanen, M Turunen, R Lehtonen, O Hallikas, S Vanharanta, T Kivioja, ...
Nature genetics 41 (8), 885-890, 2009
5932009
DNA-dependent formation of transcription factor pairs alters their binding specificity
A Jolma, Y Yin, KR Nitta, K Dave, A Popov, M Taipale, M Enge, T Kivioja, ...
Nature 527 (7578), 384-388, 2015
5442015
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
A Jolma, T Kivioja, J Toivonen, L Cheng, G Wei, M Enge, M Taipale, ...
Genome research 20 (6), 861-873, 2010
5192010
CTCF/cohesin-binding sites are frequently mutated in cancer
R Katainen, K Dave, E Pitkänen, K Palin, T Kivioja, N Välimäki, AE Gylfe, ...
Nature genetics 47 (7), 818-821, 2015
4502015
Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites
J Yan, M Enge, T Whitington, K Dave, J Liu, I Sur, B Schmierer, A Jolma, ...
Cell 154 (4), 801-813, 2013
3812013
Conservation of transcription factor binding specificities across 600 million years of bilateria evolution
KR Nitta, A Jolma, Y Yin, E Morgunova, T Kivioja, J Akhtar, K Hens, ...
elife 4, e04837, 2015
2492015
Insights into p53 transcriptional function via genome-wide chromatin occupancy and gene expression analysis
F Nikulenkov, C Spinnler, H Li, C Tonelli, Y Shi, M Turunen, T Kivioja, ...
Cell Death & Differentiation 19 (12), 1992-2002, 2012
2232012
Application of active and kinase-deficient kinome collection for identification of kinases regulating hedgehog signaling
M Varjosalo, M Björklund, F Cheng, H Syvänen, T Kivioja, S Kilpinen, ...
Cell 133 (3), 537-548, 2008
2092008
Uterine leiomyoma-linked MED12 mutations disrupt mediator-associated CDK activity
M Turunen, JM Spaeth, S Keskitalo, MJ Park, T Kivioja, AD Clark, ...
Cell reports 7 (3), 654-660, 2014
1652014
Local average intensity-based method for identifying spherical particles in electron micrographs
T Kivioja, J Ravantti, A Verkhovsky, E Ukkonen, D Bamford
Journal of structural biology 131 (2), 126-134, 2000
1202000
Sequence determinants of human gene regulatory elements
B Sahu, T Hartonen, P Pihlajamaa, B Wei, K Dave, F Zhu, E Kaasinen, ...
Nature Genetics 54 (3), 283-294, 2022
902022
Mutations in the Circadian Gene CLOCK in Colorectal Cancer
P Alhopuro, M Björklund, H Sammalkorpi, M Turunen, S Tuupanen, ...
Molecular Cancer Research 8 (7), 952-960, 2010
892010
Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences
A Jolma, J Zhang, E Mondragón, E Morgunova, T Kivioja, KU Laverty, ...
Genome research 30 (7), 962-973, 2020
772020
Counting absolute number of molecules using unique molecular identifiers
T Kivioja, A Vähärautio, K Karlsson, M Bonke, S Linnarsson, J Taipale
Nature Precedings, 1-1, 2011
752011
Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina
M Arvas, T Kivioja, A Mitchell, M Saloheimo, D Ussery, M Penttila, S Oliver
BMC genomics 8, 1-23, 2007
612007
CRISPR/Cas9 screening using unique molecular identifiers
B Schmierer, SK Botla, J Zhang, M Turunen, T Kivioja, J Taipale
Molecular systems biology 13 (10), 945, 2017
602017
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