| The GEM mapper: fast, accurate and versatile alignment by filtration S Marco-Sola, M Sammeth, R Guigó, P Ribeca Nature methods 9 (12), 1185, 2012 | 495 | 2012 |
| Fast computation and applications of genome mappability T Derrien, J Estellé, SM Sola, DG Knowles, E Raineri, R Guigó, P Ribeca PloS one 7 (1), e30377, 2012 | 457 | 2012 |
| From wet‐lab to variations: Concordance and speed of bioinformatics pipelines for whole genome and whole exome sequencing S Laurie, M Fernandez‐Callejo, S Marco‐Sola, JR Trotta, J Camps, ... Human mutation 37 (12), 1263-1271, 2016 | 37 | 2016 |
| Thread-cooperative, bit-parallel computation of levenshtein distance on GPU A Chacón, S Marco-Sola, A Espinosa, P Ribeca, JC Moure Proceedings of the 28th ACM international conference on Supercomputing, 103-112, 2014 | 31 | 2014 |
| Boosting the FM-index on the GPU: effective techniques to mitigate random memory access A Chacón, S Marco-Sola, A Espinosa, P Ribeca, JC Moure IEEE/ACM transactions on computational biology and bioinformatics 12 (5 …, 2014 | 21 | 2014 |
| ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data B Rodríguez-Martín, E Palumbo, S Marco-Sola, T Griebel, P Ribeca, ... BMC genomics 18 (1), 1-17, 2017 | 16 | 2017 |
| gemBS: high throughput processing for DNA methylation data from bisulfite sequencing A Merkel, M Fernández-Callejo, E Casals, S Marco-Sola, R Schuyler, ... Bioinformatics 35 (5), 737-742, 2019 | 14 | 2019 |
| Efficient Alignment of Illumina‐Like High‐Throughput Sequencing Reads with the GEnomic Multi‐tool (GEM) Mapper S Marco‐Sola, P Ribeca Current protocols in bioinformatics 50 (1), 11.13. 1-11.13. 20, 2015 | 11 | 2015 |
| FM-index on GPU: a cooperative scheme to reduce memory footprint A Chacón, SM Sola, A Espinosa, P Ribeca, JC Moure 2014 IEEE International Symposium on Parallel and Distributed Processing …, 2014 | 9 | 2014 |
| GEMBS—high through-put processing for DNA methylation data from Whole Genome Bisulfite Sequencing (WGBS) A Merkel, M Fernandez-Callejo, E Casals, S Marco-Sola, R Schuyler, ... BioRxiv, 201988, 2017 | 5 | 2017 |
| Fast gap-affine pairwise alignment using the wavefront algorithm S Marco-Sola, JC Moure, M Moreto, A Espinosa Bioinformatics, 2020 | 3 | 2020 |
| The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications M Cancilla, L Canalini, F Bolelli, S Allegretti, C Salvador, ... 25th International Conference on Pattern Recognition, 2020 | 2 | 2020 |
| Efficient approximate string matching techniques for sequence alignment S Marco-Sola Universitat Politècnica de Catalunya, 2017 | 2 | 2017 |
| IEEE/ACM Transactions on Computational Biology and Bioinformatics A Chacon, S Marco-Sola, P Ribeca, JC Moure IIEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015 | 1 | 2015 |
| ChimPipe: a pipeline for the precise detection of chimeras from RNA-seq data B Rodríguez-Martín, E Palumbo, S Marco-Sola, T Griebel, P Ribeca, ... Danish National Workshop on non-coding RNA, 2016 | | 2016 |
| From wet-lab to variations: robustness and speed of bioinformatics pipelines for Whole Genome and Whole Exome Sequencing. S Laurie, M Fernandez-Callejo, S Marco-Sola, JR Trotta, J Camps, ... Human Mutation, 2016 | | 2016 |
| Thread-cooperative, bit-parallel computation of Levenshtein distance on GPU A Chacón de San Baldomero, S Marco-Sola ICS: International Conference on Supercomputing, 2014 | | 2014 |
| FM-index on GPU: a cooperative scheme to reduce memory footprint A Chacón de San Baldomero, S Marco-Sola ISPA: IEEE International Symposium on Parallel and Distributed Processing …, 2014 | | 2014 |
Paolo RibecaBiomathematics and Statistics Scotland, UKVerified email at bioss.ac.uk
