Santiago Marco-Sola
Title
Cited by
Cited by
Year
The GEM mapper: fast, accurate and versatile alignment by filtration
S Marco-Sola, M Sammeth, R Guigó, P Ribeca
Nature methods 9 (12), 1185, 2012
4952012
Fast computation and applications of genome mappability
T Derrien, J Estellé, SM Sola, DG Knowles, E Raineri, R Guigó, P Ribeca
PloS one 7 (1), e30377, 2012
4572012
From wet‐lab to variations: Concordance and speed of bioinformatics pipelines for whole genome and whole exome sequencing
S Laurie, M Fernandez‐Callejo, S Marco‐Sola, JR Trotta, J Camps, ...
Human mutation 37 (12), 1263-1271, 2016
372016
Thread-cooperative, bit-parallel computation of levenshtein distance on GPU
A Chacón, S Marco-Sola, A Espinosa, P Ribeca, JC Moure
Proceedings of the 28th ACM international conference on Supercomputing, 103-112, 2014
312014
Boosting the FM-index on the GPU: effective techniques to mitigate random memory access
A Chacón, S Marco-Sola, A Espinosa, P Ribeca, JC Moure
IEEE/ACM transactions on computational biology and bioinformatics 12 (5 …, 2014
212014
ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data
B Rodríguez-Martín, E Palumbo, S Marco-Sola, T Griebel, P Ribeca, ...
BMC genomics 18 (1), 1-17, 2017
162017
gemBS: high throughput processing for DNA methylation data from bisulfite sequencing
A Merkel, M Fernández-Callejo, E Casals, S Marco-Sola, R Schuyler, ...
Bioinformatics 35 (5), 737-742, 2019
142019
Efficient Alignment of Illumina‐Like High‐Throughput Sequencing Reads with the GEnomic Multi‐tool (GEM) Mapper
S Marco‐Sola, P Ribeca
Current protocols in bioinformatics 50 (1), 11.13. 1-11.13. 20, 2015
112015
FM-index on GPU: a cooperative scheme to reduce memory footprint
A Chacón, SM Sola, A Espinosa, P Ribeca, JC Moure
2014 IEEE International Symposium on Parallel and Distributed Processing …, 2014
92014
GEMBS—high through-put processing for DNA methylation data from Whole Genome Bisulfite Sequencing (WGBS)
A Merkel, M Fernandez-Callejo, E Casals, S Marco-Sola, R Schuyler, ...
BioRxiv, 201988, 2017
52017
Fast gap-affine pairwise alignment using the wavefront algorithm
S Marco-Sola, JC Moure, M Moreto, A Espinosa
Bioinformatics, 2020
32020
The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications
M Cancilla, L Canalini, F Bolelli, S Allegretti, C Salvador, ...
25th International Conference on Pattern Recognition, 2020
22020
Efficient approximate string matching techniques for sequence alignment
S Marco-Sola
Universitat Politècnica de Catalunya, 2017
22017
IEEE/ACM Transactions on Computational Biology and Bioinformatics
A Chacon, S Marco-Sola, P Ribeca, JC Moure
IIEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015
12015
ChimPipe: a pipeline for the precise detection of chimeras from RNA-seq data
B Rodríguez-Martín, E Palumbo, S Marco-Sola, T Griebel, P Ribeca, ...
Danish National Workshop on non-coding RNA, 2016
2016
From wet-lab to variations: robustness and speed of bioinformatics pipelines for Whole Genome and Whole Exome Sequencing.
S Laurie, M Fernandez-Callejo, S Marco-Sola, JR Trotta, J Camps, ...
Human Mutation, 2016
2016
Thread-cooperative, bit-parallel computation of Levenshtein distance on GPU
A Chacón de San Baldomero, S Marco-Sola
ICS: International Conference on Supercomputing, 2014
2014
FM-index on GPU: a cooperative scheme to reduce memory footprint
A Chacón de San Baldomero, S Marco-Sola
ISPA: IEEE International Symposium on Parallel and Distributed Processing …, 2014
2014
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Articles 1–18