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Florian J. Auer
Florian J. Auer
Bestätigte E-Mail-Adresse bei informatik.uni-augsburg.de - Startseite
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A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
10472013
Global proteome analysis of the NCI-60 cell line panel
AM Gholami, H Hahne, Z Wu, FJ Auer, C Meng, M Wilhelm, B Kuster
Cell reports 4 (3), 609-620, 2013
3432013
Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer
H Chereda, A Bleckmann, K Menck, J Perera-Bel, P Stegmaier, F Auer, ...
Genome medicine 13, 1-16, 2021
842021
Homology-based inference sets the bar high for protein function prediction
T Hamp, R Kassner, S Seemayer, E Vicedo, C Schaefer, D Achten, F Auer, ...
BMC bioinformatics 14, 1-10, 2013
592013
MISeval: A Metric Library for Medical Image Segmentation Evaluation.
D Müller, D Hartmann, P Meyer, F Auer, IS Rey, F Kramer
MIE, 33-37, 2022
182022
ndexr—an R package to interface with the network data exchange
F Auer, Z Hammoud, A Ishkin, D Pratt, T Ideker, F Kramer
Bioinformatics 34 (4), 716-717, 2018
122018
RCX—an R package adapting the Cytoscape Exchange format for biological networks
F Auer, F Kramer
Bioinformatics Advances 2 (1), vbac020, 2022
42022
MetaRelSubNetVis: Referenceable network visualizations based on integrated patient data with group-wise comparison
F Auer, S Mayer, F Kramer
bioRxiv, 2022.04. 18.488628, 2022
22022
Comprehensive analysis of chemical structures that have been tested as CFTR activating substances in a publicly available database CandActCFTR
MM Nietert, L Vinhoven, F Auer, S Hafkemeyer, F Stanke
Frontiers in Pharmacology 12, 689205, 2021
22021
MISM: A Medical Image Segmentation Metric for Evaluation of Weak Labeled Data
D Hartmann, V Schmid, P Meyer, F Auer, I Soto-Rey, D Müller, F Kramer
Diagnostics 13 (16), 2618, 2023
12023
Data-dependent visualization of biological networks in the web-browser with NDExEdit
F Auer, S Mayer, F Kramer
PLOS Computational Biology 18 (6), e1010205, 2022
12022
Adaptation of HL7 FHIR for the Exchange of Patients' Gene Expression Profiles.
F Auer, Z Abdykalykova, D Müller, F Kramer
ICIMTH, 332-335, 2022
12022
Evaluation of the Availability of Nursing Quality Indicators in German FHIR Implementations
S Netzband, K Ott, F Auer, F Kramer
Healthcare Transformation with Informatics and Artificial Intelligence 305, 299, 2023
2023
Adaptation of Graph Convolutional Neural Networks and Graph Layer-wise Relevance Propagation to the Spektral library with application to gene expression data of Colorectal …
S Lutz, F Auer, D Hartmann, H Chereda, T Beißbarth, F Kramer
bioRxiv, 2023.01. 26.525010, 2023
2023
Web-based Prototype for Graphical Exploration of FHIR® Questionnaire Responses
J Frei, FJ Auer, S Netzband, Y Ignatenko, F Kramer
AMIA Annual Symposium Proceedings 2023, 351, 2023
2023
The RCX extension hub: a resource for implementations extending the R adaption of the cytoscape exchange format
F Auer, S Mayer, D Müller, F Kramer
2023
A knowledge base for generating patient-specific pathways for individualized treatment decisions in clinical applications
FJ Auer
2022
Reproducible data integration and visualization of biological networks in R
F Auer, H Chereda, J Perera-Bel, F Kramer
bioRxiv, 2022.04. 15.488519, 2022
2022
Perspective on code submission and automated evaluation platforms for university teaching
F Auer, J Frei, D Müller, F Kramer
arXiv preprint arXiv:2201.13222, 2022
2022
Implementation of gene expression profiles in the HL7 FHIR standard
F Auer, Z Abdykalykova, D Müller, F Kramer
2022
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