Kimmen Sjolander
Kimmen Sjolander
Professor of Bioengineering, University of California, Berkeley
Verified email at berkeley.edu - Homepage
Title
Cited by
Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
179332001
Hidden Markov models in computational biology: Applications to protein modeling
A Krogh, M Brown, IS Mian, K Sjölander, D Haussler
Journal of molecular biology 235 (5), 1501-1531, 1994
25641994
MODBASE: a database of annotated comparative protein structure models and associated resources
U Pieper, N Eswar, FP Davis, H Braberg, MS Madhusudhan, A Rossi, ...
Nucleic acids research 34 (suppl_1), D291-D295, 2006
891*2006
The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions
T Kleffmann, D Russenberger, A von Zychlinski, W Christopher, ...
Current Biology 14 (5), 354-362, 2004
6512004
Stochastic context-free grammers for tRNA modeling
Y Sakakibara, M Brown, R Hughey, IS Mian, K Sjölander, RC Underwood, ...
Nucleic acids research 22 (23), 5112-5120, 1994
5291994
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology
K Sjölander, K Karplus, M Brown, R Hughey, A Krogh, IS Mian, ...
Bioinformatics 12 (4), 327-345, 1996
4441996
From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants
E Magnani, K Sjölander, S Hake
The Plant Cell 16 (9), 2265-2277, 2004
2752004
Phylogenomic inference of protein molecular function: advances and challenges
K Sjölander
Bioinformatics 20 (2), 170-179, 2004
2552004
Using Dirichlet mixture priors to derive hidden Markov models for protein families.
M Brown, R Hughey, A Krogh, IS Mian, K Sjölander, D Haussler
Ismb 1, 47-55, 1993
2551993
Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis
LK Fritz-Laylin, N Krishnamurthy, M Tör, KV Sjölander, JDG Jones
Plant physiology 138 (2), 611-623, 2005
2262005
Predicting protein structure using hidden Markov models
K Karplus, K Sjölander, C Barrett, M Cline, D Haussler, R Hughey, L Holm, ...
Proteins: Structure, Function, and Bioinformatics 29 (S1), 134-139, 1997
2171997
Functional analysis of Avr9/Cf-9 rapidly elicited genes identifies a protein kinase, ACIK1, that is essential for full Cf-9–dependent disease resistance in tomato
O Rowland, AA Ludwig, CJ Merrick, F Baillieul, FE Tracy, WE Durrant, ...
The Plant Cell 17 (1), 295-310, 2005
1872005
Molecular characterization of proteolytic cleavage sites of the Pseudomonas syringae effector AvrRpt2
ST Chisholm, D Dahlbeck, N Krishnamurthy, B Day, K Sjolander, ...
Proceedings of the National Academy of Sciences 102 (6), 2087-2092, 2005
1792005
Protein modeling using hidden Markov models: Analysis of globins
D Haussler, A Krogh, IS Mian, K Sjolander
[1993] Proceedings of the Twenty-sixth Hawaii International Conference on …, 1993
1681993
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
1652012
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
1612016
A comparison of scoring functions for protein sequence profile alignment
RC Edgar, K Sjölander
Bioinformatics 20 (8), 1301-1308, 2004
1392004
Proteome analysis of the rice etioplast: metabolic and regulatory networks and novel protein functions
A von Zychlinski, T Kleffmann, N Krishnamurthy, K Sjölander, S Baginsky, ...
Molecular & Cellular Proteomics 4 (8), 1072-1084, 2005
1182005
Automated protein subfamily identification and classification
DP Brown, N Krishnamurthy, K Sjölander
PLoS Comput Biol 3 (8), e160, 2007
1172007
COACH: profile–profile alignment of protein families using hidden Markov models
RC Edgar, K Sjölander
Bioinformatics 20 (8), 1309-1318, 2004
1122004
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