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Sagar Khare
Sagar Khare
Assistant Professor of Chemistry and Chemical Biology, Rutgers University
Verified email at rutgers.edu - Homepage
Title
Cited by
Cited by
Year
Quantitative reactivity profiling predicts functional cysteines in proteomes
E Weerapana, C Wang, GM Simon, F Richter, S Khare, MBD Dillon, ...
Nature 468 (7325), 790-795, 2010
15502010
RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite
SJ Fleishman, A Leaver-Fay, JE Corn, EM Strauch, SD Khare, N Koga, ...
PloS one 6 (6), e20161, 2011
5762011
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5302020
Computational design of ligand-binding proteins with high affinity and selectivity
CE Tinberg, SD Khare, J Dou, L Doyle, JW Nelson, A Schena, ...
Nature 501 (7466), 212-216, 2013
4732013
De novo enzyme design using Rosetta3
F Richter, A Leaver-Fay, SD Khare, S Bjelic, D Baker
PloS one 6 (5), e19230, 2011
3942011
Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@ home
R Das, B Qian, S Raman, R Vernon, J Thompson, P Bradley, S Khare, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 118-128, 2007
2702007
Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis
SD Khare, Y Kipnis, PJ Greisen, R Takeuchi, Y Ashani, M Goldsmith, ...
Nature chemical biology 8 (3), 294-300, 2012
2522012
Molecular dynamics simulation of amyloid β dimer formation
B Urbanc, L Cruz, F Ding, D Sammond, S Khare, SV Buldyrev, HE Stanley, ...
Biophysical journal 87 (4), 2310-2321, 2004
2492004
The rate and equilibrium constants for a multistep reaction sequence for the aggregation of superoxide dismutase in amyotrophic lateral sclerosis
SD Khare, M Caplow, NV Dokholyan
Proceedings of the National Academy of Sciences 101 (42), 15094-15099, 2004
1832004
Computational design of catalytic dyads and oxyanion holes for ester hydrolysis
F Richter, R Blomberg, SD Khare, G Kiss, AP Kuzin, AJT Smith, J Gallaher, ...
Journal of the American Chemical Society 134 (39), 16197-16206, 2012
1772012
FireProt: energy-and evolution-based computational design of thermostable multiple-point mutants
D Bednar, K Beerens, E Sebestova, J Bendl, S Khare, R Chaloupkova, ...
PLoS computational biology 11 (11), e1004556, 2015
1582015
Computational design of an unnatural amino acid dependent metalloprotein with atomic level accuracy
JH Mills, SD Khare, JM Bolduc, F Forouhar, VK Mulligan, S Lew, ...
Journal of the American Chemical Society 135 (36), 13393-13399, 2013
1272013
Molecular origin of polyglutamine aggregation in neurodegenerative diseases
SD Khare, F Ding, KN Gwanmesia, NV Dokholyan
PLoS computational biology 1 (3), e30, 2005
1272005
Engineering V-type nerve agents detoxifying enzymes using computationally focused libraries
I Cherny, P Greisen Jr, Y Ashani, SD Khare, G Oberdorfer, H Leader, ...
ACS chemical biology 8 (11), 2394-2403, 2013
1202013
Common dynamical signatures of familial amyotrophic lateral sclerosis-associated structurally diverse Cu, Zn superoxide dismutase mutants
SD Khare, NV Dokholyan
Proceedings of the National Academy of Sciences 103 (9), 3147-3152, 2006
1142006
Can contact potentials reliably predict stability of proteins?
J Khatun, SD Khare, NV Dokholyan
Journal of molecular biology 336 (5), 1223-1238, 2004
922004
New insights into FAK signaling and localization based on detection of a FAT domain folding intermediate
RDS Dixon, Y Chen, F Ding, SD Khare, KC Prutzman, MD Schaller, ...
Structure 12 (12), 2161-2171, 2004
802004
Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition
KM Davis, KR Schramma, WA Hansen, JP Bacik, SD Khare, ...
Proceedings of the National Academy of Sciences 114 (39), 10420-10425, 2017
792017
Folding of Cu, Zn superoxide dismutase and familial amyotrophic lateral sclerosis
SD Khare, F Ding, NV Dokholyan
Journal of molecular biology 334 (3), 515-525, 2003
782003
FALS mutations in Cu, Zn superoxide dismutase destabilize the dimer and increase dimer dissociation propensity: a large-scale thermodynamic analysis
SD Khare, M Caplow, NV Dokholyan
Amyloid 13 (4), 226-235, 2006
692006
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