Robert Hoehndorf

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Citations	6307	4105
h-index	43	30
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Georgios GkoutosUniversity of Birmingham, College of Medical and Dental SciencesVerified email at bham.ac.uk
Maxat KulmanovKing Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Michel DumontierDistinguished Professor of Data Science, Maastricht UniversityVerified email at maastrichtuniversity.nl
Janet KelsoMPI EVAVerified email at eva.mpg.de
Dietrich Rebholz-SchuhmannZB MED -- Information Center for Life SciencesVerified email at zbmed.de
Xin GaoProfessor, Computer Sciences; Associate Director, Computational Bioscience Research CenterVerified email at kaust.edu.sa
Anika Cawthorn (formerly Oellrich)University College LondonVerified email at ucl.ac.uk
Frank LoebeUniversity of LeipzigVerified email at informatik.uni-leipzig.de
Luke T SlaterUniversity of BirminghamVerified email at bham.ac.uk
Fatima Zohra SmailiMcGill UniversityVerified email at mail.mcgill.ca
Núria Queralt-RosinachLeiden University Medical CenterVerified email at lumc.nl
Mona AlshahraniNational Center for Artificial Intelligence (NCAI), SDAIA, Saudi ArabiaVerified email at kaust.edu.sa
Patryk BurekPolish-Japanese Academy of Information Technology, Warsaw, PolandVerified email at informatik.uni-leipzig.de
Imane BoudelliouaKing Fahd University of Petroleum and MineralsVerified email at kfupm.edu.sa
Johann VisagieBioinformatics Programmer, Max Planck Institute for Evolutionary AnthropologyVerified email at eva.mpg.de
Andreas KarwathAssociate Professor, Deputy Programme Director Health Data Science, University of Birmingham, UKVerified email at bham.ac.uk
Axel-Cyrille Ngonga NgomoProfessor of Data Science at Paderborn UniversityVerified email at upb.de
Azza AlthagafiPh.D. Student in Computer Science at KAUST, Faculty Member at Taif University (TU)Verified email at kaust.edu.sa
Sarala M WimalaratneDataCiteVerified email at datacite.org
Marco SchmidtPalmengarten FrankfurtVerified email at stadt-frankfurt.de

Robert Hoehndorf

King Abdullah University of Science and Technology

Verified email at kaust.edu.sa - Homepage

Bioinformatics Knowledge representation Applied Ontology


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DeepGO: Predicting protein functions from sequence and interactions using a deep ontology-aware classifier M Kulmanov, MA Khan, R Hoehndorf Bioinformatics 34 (4), 660-668, 2017	323	2017
The role of ontologies in biological and biomedical research: a functional perspective R Hoehndorf, PN Schofield, GV Gkoutos Briefings in bioinformatics 16 (6), 1069-1080, 2015	286	2015
Text-mining solutions for biomedical research: enabling integrative biology D Rebholz-Schuhmann, A Oellrich, R Hoehndorf Nature Reviews Genetics 13 (12), 829-839, 2012	270	2012
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019	261	2019
PhenomeNET: a whole-phenome approach to disease gene discovery R Hoehndorf, PN Schofield, GV Gkoutos Nucleic acids research 39 (18), e119-e119, 2011	225	2011
DeepGOPlus: Improved protein function prediction from sequence M Kulmanov, R Hoehndorf Bioinformatics 36 (2), 422–429, 2020	218	2020
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery M Dumontier, CJO Baker, J Baran, A Callahan, L Chepelev, ... Journal of biomedical semantics 5, 1-11, 2014	211	2014
General Formal Ontology (GFO)--A Foundational Ontology Integrating Objects and Processes [Version 1.0] H Herre, B Heller, P Burek, R Hoehndorf, F Loebe, H Michalek Philosophy 19 (8), 2006	209	2006
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration DM Dooley, EJ Griffiths, GS Gosal, PL Buttigieg, R Hoehndorf, MC Lange, ... npj Science of Food 2 (1), 23, 2018	181	2018
Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics M Hrabě de Angelis, G Nicholson, M Selloum, JK White, H Morgan, ... Nature genetics 47 (9), 969-978, 2015	136	2015
Neuro-symbolic representation learning on biological knowledge graphs M Alshahrani, MA Khan, O Maddouri, AR Kinjo, N Queralt-Rosinach, ... Bioinformatics 33 (17), 2723-2730, 2017	131	2017
Opa2vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction FZ Smaili, X Gao, R Hoehndorf Bioinformatics 35 (12), 2133-2140, 2018	121	2018
Semantic similarity and machine learning with ontologies. M Kulmanov, FZ Smaili, X Gao, R Hoehndorf Briefings in Bioinformatics, 2020	114*	2020
Semi-supervised entity alignment via knowledge graph embedding with awareness of degree difference S Pei, L Yu, R Hoehndorf, X Zhang The World Wide Web Conference, 3130-3136, 2019	110	2019
The Units Ontology: a tool for integrating units of measurement in science GV Gkoutos, PN Schofield, R Hoehndorf Database 2012, 2012	110	2012
Evaluation of research in biomedical ontologies R Hoehndorf, M Dumontier, GV Gkoutos Briefings in bioinformatics 14 (6), 696-712, 2013	106	2013
Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations FZ Smaili, X Gao, R Hoehndorf Bioinformatics 34 (13), i52–i60, 2018	103	2018
Analysis of the human diseasome using phenotype similarity between common, genetic and infectious diseases R Hoehndorf, PN Schofield, GV Gkoutos Scientific reports 5 (1), 1-14, 2015	103	2015
Aber-OWL: a framework for ontology-based data access in biology R Hoehndorf, L Slater, PN Schofield, GV Gkoutos BMC bioinformatics 16, 1-9, 2015	98	2015
Integrating systems biology models and biomedical ontologies R Hoehndorf, M Dumontier, JH Gennari, S Wimalaratne, B De Bono, ... BMC systems biology 5, 1-16, 2011	79	2011

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