| RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis Bioinformatics 35 (21), 4453-4455, 2019 | 2905 | 2019 |
| ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri Molecular biology and evolution 37 (1), 291-294, 2020 | 1410 | 2020 |
| Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21, 1-35, 2020 | 1050 | 2020 |
| Evolutionary history of the Hymenoptera RS Peters, L Krogmann, C Mayer, A Donath, S Gunkel, K Meusemann, ... Current Biology 27 (7), 1013-1018, 2017 | 801 | 2017 |
| EPA-ng: massively parallel evolutionary placement of genetic sequences P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ... Systematic biology 68 (2), 365-369, 2019 | 515 | 2019 |
| Phylogenomics and the evolution of hemipteroid insects KP Johnson, CH Dietrich, F Friedrich, RG Beutel, B Wipfler, RS Peters, ... Proceedings of the National Academy of Sciences 115 (50), 12775-12780, 2018 | 336 | 2018 |
| Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests F Mahé, C de Vargas, D Bass, L Czech, A Stamatakis, E Lara, D Singer, ... Nature ecology & evolution 1 (4), 0091, 2017 | 279 | 2017 |
| ExaML version 3: a tool for phylogenomic analyses on supercomputers AM Kozlov, AJ Aberer, A Stamatakis Bioinformatics 31 (15), 2577-2579, 2015 | 246 | 2015 |
| Phylogenomic analysis of Apoidea sheds new light on the sister group of bees M Sann, O Niehuis, RS Peters, C Mayer, A Kozlov, L Podsiadlowski, ... BMC evolutionary biology 18, 1-15, 2018 | 204 | 2018 |
| Phylogenetic analysis of SARS-CoV-2 data is difficult B Morel, P Barbera, L Czech, B Bettisworth, L Hübner, S Lutteropp, ... Molecular biology and evolution 38 (5), 1777-1791, 2021 | 159 | 2021 |
| GeneRax: a tool for species-tree-aware maximum likelihood-based gene family tree inference under gene duplication, transfer, and loss B Morel, AM Kozlov, A Stamatakis, GJ Szöllősi Molecular biology and evolution 37 (9), 2763-2774, 2020 | 112 | 2020 |
| Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae) S Bank, M Sann, C Mayer, K Meusemann, A Donath, L Podsiadlowski, ... Molecular phylogenetics and evolution 116, 213-226, 2017 | 110 | 2017 |
| Phylogeny-aware identification and correction of taxonomically mislabeled sequences AM Kozlov, J Zhang, P Yilmaz, FO Glöckner, A Stamatakis Nucleic acids research 44 (11), 5022-5033, 2016 | 109 | 2016 |
| Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success RS Peters, O Niehuis, S Gunkel, M Bläser, C Mayer, L Podsiadlowski, ... Molecular phylogenetics and evolution 120, 286-296, 2018 | 99 | 2018 |
| Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity M Jamy, R Foster, P Barbera, L Czech, A Kozlov, A Stamatakis, ... Molecular Ecology Resources 20 (2), 429-443, 2020 | 94 | 2020 |
| ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes B Morel, AM Kozlov, A Stamatakis Bioinformatics 35 (10), 1771-1773, 2019 | 63 | 2019 |
| CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data A Kozlov, JM Alves, A Stamatakis, D Posada Genome biology 23 (1), 37, 2022 | 55 | 2022 |
| New data, same story: phylogenomics does not support Syrphoidea (Diptera: Syrphidae, Pipunculidae) T Pauli, TO Burt, K Meusemann, K Bayless, A Donath, L Podsiadlowski, ... Systematic Entomology 43 (3), 447-459, 2018 | 53 | 2018 |
| Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system N Psonis, A Antoniou, E Karameta, AD Leaché, P Kotsakiozi, D Darriba, ... Molecular Phylogenetics and Evolution 125, 100-115, 2018 | 46 | 2018 |
| A roadmap for global synthesis of the plant tree of life WL Eiserhardt, A Antonelli, DJ Bennett, LR Botigué, JG Burleigh, ... American Journal of Botany 105 (3), 614-622, 2018 | 39 | 2018 |
Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
