Samuel MD Oliveira
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Dissecting the stochastic transcription initiation process in live Escherichia coli
J Lloyd-Price, S Startceva, V Kandavalli, JG Chandraseelan, N Goncalves, ...
DNA Research 23 (3), 203-214, 2016
In vivo kinetics of segregation and polar retention of MS2-GFP-RNA complexes in Escherichia coli
A Gupta, J Lloyd-Price, R Neeli-Venkata, SMD Oliveira, AS Ribeiro
Biophysical journal 106 (9), 1928-1937, 2014
In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter
J Mäkelä, M Kandhavelu, SMD Oliveira, JG Chandraseelan, J Lloyd-Price, ...
Nucleic acids research 41 (13), 6544-6552, 2013
Kinetics of the cellular intake of a gene expression inducer at high concentrations
H Tran, SMD Oliveira, N Goncalves, AS Ribeiro
Molecular BioSystems 11 (9), 2579-2587, 2015
Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli
SMD Oliveira, R Neeli‐Venkata, NSM Goncalves, JA Santinha, L Martins, ...
Molecular microbiology 99 (4), 686-699, 2016
Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements
SMD Oliveira, A Häkkinen, J Lloyd-Price, H Tran, V Kandavalli, ...
PLoS computational biology 12 (10), e1005174, 2016
Robustness of the division symmetry in Escherichia coli and functional consequences of symmetry breaking
A Gupta, J Lloyd-Price, SMD Oliveira, O Yli-Harja, AB Muthukrishnan, ...
Physical biology 11 (6), 066005, 2014
Effects of temperature on the dynamics of the LacI-TetR-CI repressilator
JG Chandraseelan, SMD Oliveira, A Häkkinen, H Tran, I Potapov, A Sala, ...
Molecular BioSystems 9 (12), 3117-3123, 2013
Temperature-dependence of the single-cell variability in the kinetics of transcription activation in Escherichia coli
NSM Goncalves, S Startceva, CSD Palma, MNM Bahrudeen, ...
Physical biology 15 (2), 026007, 2018
Incidental inflammatory adenoma with β‐catenin activation in the setting of paediatric NASH
S Oliveira, AK Samba, AJ Towbin, A Gupta, JI Geller, JD Nathan, R Kohli
Pediatric obesity 13 (1), 70-73, 2018
Single-cell kinetics of a repressilator when implemented in a single-copy plasmid
SMD Oliveira, JG Chandraseelan, A Häkkinen, NSM Goncalves, ...
Molecular BioSystems 11 (7), 1939-1945, 2015
SCIP: a single-cell image processor toolbox
L Martins, R Neeli-Venkata, SMD Oliveira, A Häkkinen, AS Ribeiro, ...
Bioinformatics 34 (24), 4318-4320, 2018
iCellFusion: Tool for fusion and analysis of live-cell images from time-lapse multimodal microscopy
J Santinha, L Martins, A Häkkinen, J Lloyd-Price, SMD Oliveira, A Gupta, ...
Biomedical Image Analysis and Mining Techniques for Improved Health Outcomes …, 2016
The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures
R Neeli-Venkata, SMD Oliveira, L Martins, S Startceva, M Bahrudeen, ...
Physical biology 15 (5), 056002, 2018
A strategy for dissecting the kinetics of transcription repression mechanisms
CSD Palma, S Startceva, R Neeli-Venkata, M Zare, NSM Goncalves, ...
EMBEC & NBC 2017, 1097-1100, 2017
Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry
MNM Bahrudeen, V Chauhan, CSD Palma, SMD Oliveira, VK Kandavalli, ...
Journal of microbiological methods 166, 105745, 2019
Chromosome and plasmid-borne P LacO3O1 promoters differ in sensitivity to critically low temperatures
SMD Oliveira, NSM Goncalves, VK Kandavalli, L Martins, ...
Scientific reports 9 (1), 1-15, 2019
Estimating effects of extrinsic noise on model genes and circuits with empirically validated kinetics
SMD Oliveira, MNM Bahrudeen, S Startceva, AS Ribeiro
Italian Workshop on Artificial Life and Evolutionary Computation, 181-193, 2017
In vivo single-molecule dynamics of transcription of the viral T7 Phi 10 promoter in Escherichia coli
NSM Goncalves, H Tran, SMD Oliveira, R Neeli-Venkata, AS Ribeiro, ...
BIOTECHNO 2016, 17, 2016
Transcription closed and open complex formation coordinate expression of genes with a shared promoter region
A Häkkinen, SMD Oliveira, R Neeli-Venkata, AS Ribeiro
Journal of the Royal Society Interface 16 (161), 20190507, 2019
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