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Aafke A. van den Berg
Aafke A. van den Berg
Data Scientist
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Title
Cited by
Cited by
Year
Chromosome organization by one-sided and two-sided loop extrusion
EJ Banigan, AA van den Berg, HB Brandão, JF Marko, LA Mirny
bioRxiv, 815340, 2019
1062019
RNA polymerases as moving barriers to condensin loop extrusion
HB Brandão, P Paul, AA van den Berg, DZ Rudner, X Wang, LA Mirny
Proceedings of the National Academy of Sciences 116 (41), 20489-20499, 2019
1042019
Transcription shapes 3D chromatin organization by interacting with loop extrusion
EJ Banigan, W Tang, AA van den Berg, RR Stocsits, G Wutz, HB Brandão, ...
Proceedings of the National Academy of Sciences 120 (11), e2210480120, 2023
712023
Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells
MC Moolman, ST Krishnan, JWJ Kerssemakers, A Van Den Berg, ...
Nature communications 5 (1), 5820, 2014
692014
Single pairs of time-bin-entangled photons
MAM Versteegh, ME Reimer, AA van den Berg, G Juska, ...
Physical Review A 92 (3), 033802, 2015
422015
Crowding-induced transcriptional bursts dictate polymerase and nucleosome density profiles along genes
AA van den Berg, M Depken
Nucleic acids research 45 (13), 7623-7632, 2017
152017
Resolving the subtle details of human DNA alkyltransferase lesion search and repair mechanism by single-molecule studies
S Kono, A van den Berg, M Simonetta, A Mukhortava, EF Garman, ...
Proceedings of the National Academy of Sciences 119 (11), e2116218119, 2022
102022
The interplay between polymerase organization and nucleosome occupancy along DNA: How dynamic roadblocks on the DNA induce the formation of RNA polymerase pelotons
AA Van Den Berg
Delft University of Technology, 2017
12017
Crowding on DNA as a Source of Bursts in mRNA Production
AA van den Berg, SM Depken
Biophysical Journal 108 (2), 535a, 2015
12015
Transcription is a moving barrier to loop extrusion that shapes the genome
E Banigan, W Tang, A van den Berg, R Stocsits, G Wutz, H Brandão, ...
Bulletin of the American Physical Society, 2023
2023
When motors collide: how transcription and loop-extruding cohesins organize chromatin
E Banigan, W Tang, A van den Berg, R Stocsits, G Wutz, H Brandão, ...
APS March Meeting Abstracts 2022, W06. 005, 2022
2022
RNAP as a Moving Barrier to Loop Extrusion
AA van den Berg, G Wutz, RR Stocsits, H Brandao, G Busslinger, ...
Biophysical Journal 116 (3), 22a, 2019
2019
The structural consequences of one-sided loop extrusion
E Banigan, A van den Berg, H Brandao, J Marko, L Mirny
APS March Meeting Abstracts 2019, S65. 007, 2019
2019
Supporting Information for: RNA polymerases as moving barriers to condensin loop extrusion
HB Brandão, P Paul, A van den Berg, DZ Rudner, X Wang, LA Mirny
Supplementary material Crowding-induced transcriptional bursts dictate polymerase and nucleocome density profiles along genes
AA van den Berg, M Depken
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