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Werner Van Geit
Werner Van Geit
Project Leader High Performance Neuroscience, IT'IS Foundation
Bestätigte E-Mail-Adresse bei itis.swiss - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Reconstruction and simulation of neocortical microcircuitry
H Markram, E Muller, S Ramaswamy, MW Reimann, M Abdellah, ...
Cell 163 (2), 456-492, 2015
14182015
Automated neuron model optimization techniques: a review
W Van Geit, E De Schutter, P Achard
Biological cybernetics 99, 241-251, 2008
1792008
The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex
S Ramaswamy, JD Courcol, M Abdellah, SR Adaszewski, N Antille, ...
Frontiers in neural circuits 9, 44, 2015
1522015
BluePyOpt: leveraging open source software and cloud infrastructure to optimise model parameters in neuroscience
W Van Geit, M Gevaert, G Chindemi, C Rössert, JD Courcol, EB Muller, ...
Frontiers in neuroinformatics 10, 17, 2016
1492016
Software Appendix
V Matveev
1162010
The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow
R Migliore, CA Lupascu, LL Bologna, A Romani, JD Courcol, S Antonel, ...
PLoS computational biology 14 (9), e1006423, 2018
932018
Open source brain: a collaborative resource for visualizing, analyzing, simulating, and developing standardized models of neurons and circuits
P Gleeson, M Cantarelli, B Marin, A Quintana, M Earnshaw, S Sadeh, ...
Neuron 103 (3), 395-411. e5, 2019
822019
Neurofitter: a parameter tuning package for a wide range of electrophysiological neuron models
W Van Geit, P Achard, E De Schutter
Frontiers in neuroinformatics 1, 89, 2007
762007
Single neuron optimization as a basis for accurate biophysical modeling: the case of cerebellar granule cells
S Masoli, MF Rizza, M Sgritta, W Van Geit, F Schürmann, E D'Angelo
Frontiers in cellular neuroscience 11, 71, 2017
422017
The SONATA data format for efficient description of large-scale network models
K Dai, J Hernando, YN Billeh, SL Gratiy, J Planas, AP Davison, ...
PLoS computational biology 16 (2), e1007696, 2020
392020
A calcium-based plasticity model for predicting long-term potentiation and depression in the neocortex
G Chindemi, M Abdellah, O Amsalem, R Benavides-Piccione, V Delattre, ...
Nature Communications 13 (1), 3038, 2022
352022
Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons
E Iavarone, J Yi, Y Shi, BJ Zandt, C O’reilly, W Van Geit, C Rössert, ...
PLoS computational biology 15 (5), e1006753, 2019
342019
From neuron biophysics to orientation selectivity in electrically coupled networks of neocortical L2/3 large basket cells
O Amsalem, W Van Geit, E Muller, H Markram, I Segev
Cerebral Cortex 26 (8), 3655-3668, 2016
332016
Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types
A Nandi, T Chartrand, W Van Geit, A Buchin, Z Yao, SY Lee, Y Wei, ...
Cell reports 40 (6), 2022
292022
Computational synthesis of cortical dendritic morphologies
L Kanari, H Dictus, A Chalimourda, A Arnaudon, W Van Geit, B Coste, ...
Cell Reports 39 (1), 2022
172022
HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data
S Sáray, CA Rössert, S Appukuttan, R Migliore, P Vitale, CA Lupascu, ...
PLoS computational biology 17 (1), e1008114, 2021
132021
Modeling complex neurons
E De Schutter, W Van Geit
122009
Modeling and simulation of rat non-barrel somatosensory cortex. part i: Modeling anatomy
MW Reimann, S Bolaños-Puchet, JD Courcol, DE Santander, A Arnaudon, ...
bioRxiv, 2022.08. 11.503144, 2022
102022
Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep
E Iavarone, J Simko, Y Shi, M Bertschy, M García-Amado, P Litvak, ...
Cell Reports 42 (3), 2023
92023
Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex
Y Wei, A Nandi, X Jia, JH Siegle, D Denman, SY Lee, A Buchin, ...
Nature Communications 14 (1), 2344, 2023
52023
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