Ananth Kalyanaraman

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Mahantesh HalappanavarChief Scientist & Group Leader, Pacific Northwest National LaboratoryVerified email at pnnl.gov
Partha PandeWashington State UniversityVerified email at wsu.edu
Srinivas AluruProfessor and Executive Director of Institute for Data Engineering and Science, Georgia TechVerified email at cc.gatech.edu
Hao LuOak Ridge National labVerified email at ornl.gov
Turbo MajumderPrincipal Power and Performance Engineer, MicrosoftVerified email at microsoft.com
Antonino TumeoPacific Northwest National LaboratoryVerified email at pnnl.gov
Sayan GhoshComputer Scientist, Pacific Northwest National LaboratoryVerified email at pnnl.gov
Daniel Chavarría-MirandaResearch Scientist, Pacific Northwest National LaboratoryVerified email at pnl.gov
Assefaw GebremedhinWashington State University, School of EECSVerified email at eecs.wsu.edu
William R. CannonPacific Northwest National LaboratoryVerified email at pnnl.gov
Sriram KrishnamoorthyPacific Northwest National LaboratoryVerified email at pnnl.gov
Marco MinutoliPacific Northwest National LaboratoryVerified email at pnnl.gov
Methun KamruzzamanPostdoctoral Research Associate at UVAVerified email at virginia.edu
Patrick SchnableIowa State UniversityVerified email at iastate.edu
Andy WuResearch ScientistVerified email at xerox.com
Bala KrishnamoorthyProfessor of Mathematics, Washington State UniversityVerified email at wsu.edu
Inna Campo-RytsarevaData Scientist at IBMVerified email at us.ibm.com
Volker BrendelProfessor of Biology and Computer Science, Indiana UniversityVerified email at indiana.edu
Souradip SarkarResearcher at Bell Labs,Verified email at alcatel-lucent.com

Ananth Kalyanaraman

Other namesAnantharaman Kalyanaraman

Washington State University, Pacific Northwest National Laboratory

Verified email at wsu.edu - Homepage

Parallel algorithms HPC Computational biology and bioinformatics graph algorithms Digital agriculture


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The B73 maize genome: complexity, diversity, and dynamics PS Schnable, D Ware, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, ... science 326 (5956), 1112, 2009	4211	2009
The genome of the domesticated apple (Malus × domestica Borkh.) R Velasco, A Zharkikh, J Affourtit, A Dhingra, A Cestaro, A Kalyanaraman, ... Nature genetics 42 (10), 833-839, 2010	2194	2010
Genome sequencing and analysis of the model grass Brachypodium distachyon DNA sequencing and assembly Barry Kerrie 5 Lucas Susan 5 Harmon-Smith ... Nature 463 (7282), 763-768, 2010	1789	2010
Parallel heuristics for scalable community detection H Lu, M Halappanavar, A Kalyanaraman Parallel Computing 47, 19-37, 2015	194	2015
Efficient clustering of large EST data sets on parallel computers A Kalyanaraman, S Aluru, S Kothari, V Brendel Nucleic Acids Research 31 (11), 2963-2974, 2003	116	2003
Distributed louvain algorithm for graph community detection S Ghosh, M Halappanavar, A Tumeo, A Kalyanaraman, H Lu, ... 2018 IEEE international parallel and distributed processing symposium (IPDPS …, 2018	86	2018
Network-on-chip hardware accelerators for biological sequence alignment S Sarkar, GR Kulkarni, PP Pande, A Kalyanaraman Computers, IEEE Transactions on 59 (1), 29-41, 2010	79	2010
Efficient algorithms and software for detection of full-length LTR retrotransposons A Kalyanaraman, S Aluru Computational Systems Bioinformatics Conference, 2005. Proceedings. 2005 …, 2005	65	2005
Hardware accelerators for biocomputing: A survey S Sarkar, T Majumder, A Kalyanaraman, PP Pande Proceedings of 2010 IEEE International Symposium on Circuits and Systems …, 2010	62	2010
Space and time efficient parallel algorithms and software for EST clustering A Kalyanaraman, S Aluru, V Brendel, S Kothari IEEE Transactions on parallel and distributed systems 14 (12), 1209-1221, 2003	59	2003
Detailed analysis of a contiguous 22-Mb region of the maize genome F Wei, JC Stein, C Liang, J Zhang, RS Fulton, RS Baucom, E De Paoli, ... PloS Genetics 5 (11), e1000728, 2009	54	2009
A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans M Mitreva, AA Elling, M Dante, AP Kloek, A Kalyanaraman, S Aluru, ... Molecular Genetics and Genomics 272 (2), 138-148, 2004	53	2004
Efficient detection of communities in biological bipartite networks P Pesántez-Cabrera, A Kalyanaraman IEEE/ACM transactions on computational biology and bioinformatics 16 (1 …, 2017	45*	2017
Assembling genomes on large-scale parallel computers A Kalyanaraman, SJ Emrich, PS Schnable, S Aluru Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006	44	2006
Algorithms for balanced graph colorings with applications in parallel computing H Lu, M Halappanavar, D Chavarria-Miranda, AH Gebremedhin, ... IEEE Transactions on Parallel and Distributed Systems 28 (5), 1240-1256, 2016	43*	2016
BioEarth: Envisioning and developing a new regional earth system model to inform natural and agricultural resource management JC Adam, JC Stephens, SH Chung, MP Brady, RD Evans, CE Kruger, ... Climatic Change 129, 555-571, 2015	41	2015
Attenuation of virulence in an apicomplexan hemoparasite results in reduced genome diversity at the population level A Lau, A Kalyanaraman, I Echaide, G Palmer, R Bock, M Pedroni, ... BMC genomics 12 (1), 410, 2011	41	2011
Scalable static and dynamic community detection using grappolo M Halappanavar, H Lu, A Kalyanaraman, A Tumeo 2017 IEEE High Performance Extreme Computing Conference (HPEC), 1-6, 2017	39	2017
pGraph: Efficient Parallel Construction of Large-Scale Protein Sequence Homology Graphs C Wu, A Kalyanaraman, WR Cannon	39*
MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification A Kalyanaraman, WR Cannon, B Latt, DJ Baxter Bioinformatics 27 (21), 3072-3073, 2011	32	2011

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