Daniel Doerr
Daniel Doerr
Verified email at cebitec.uni-bielefeld.de - Homepage
Cited by
Cited by
Orthology detection combining clustering and synteny for very large datasets
M Lechner, M Hernandez-Rosales, D Doerr, N Wieseke, A Thévenin, ...
PLoS One 9 (8), 2014
Gene family assignment-free comparative genomics
D Doerr, A Thévenin, J Stoye
BMC bioinformatics 13 (S19), S3, 2012
The potential of family-free genome comparison
MDV Braga, C Chauve, D Doerr, K Jahn, J Stoye, A Thévenin, R Wittler
Models and Algorithms for Genome Evolution, 287-307, 2013
Identifying gene clusters by discovering common intervals in indeterminate strings
D Doerr, J Stoye, S Böcker, K Jahn
BMC genomics 15 (S6), S2, 2014
Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains
D Doerr, K Hu, S Renly, S Edlund, M Davis, JH Kaufman, J Lessler, ...
Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS …, 2012
Gene family-free genome comparison
D Dörr
GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data
T Schulz, J Stoye, D Doerr
BMC genomics 19 (5), 308, 2018
Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes
N Luhmann, D Doerr, C Chauve
Microbial genomics 3 (9), 2017
Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions
D Doerr, I Gronau, S Moran, I Yavneh
Algorithms for Molecular Biology 7 (1), 22, 2012
Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
D Rubert, FHV Martinez, J Stoye, D Dörr
BMC Genomics, 2019
The gene family-free median of three
D Doerr, M Balaban, P Feijão, C Chauve
Algorithms for Molecular Biology 12 (1), 14, 2017
New Genome Similarity Measures based on Conserved Gene Adjacencies
D Doerr, LAB Kowada, E Araujo, S Deshpande, S Dantas, BME Moret, ...
Journal of Computational Biology 24 (6), 616-634, 2017
New genome similarity measures based on conserved gene adjacencies
LAB Kowada, D Doerr, S Dantas, J Stoye
International Conference on Research in Computational Molecular Biology, 204-224, 2016
Sequence-based synteny analysis of multiple large genomes
D Doerr, BME Moret
Comparative Genomics, 317-329, 2018
Family-free genome comparison
D Doerr, P Feijão, J Stoye
Comparative Genomics, 331-342, 2018
Computing the rearrangement distance of natural genomes
L Bohnenkämper, MDV Braga, D Doerr, J Stoye
arXiv preprint arXiv:2001.02139, 2020
Horizontal Gene Transfer Phylogenetics: A Random Walk Approach
G Sevillya, D Doerr, Y Lerner, J Stoye, M Steel, S Snir
Molecular Biology and Evolution, 2019
A Perspective on Comparative and Functional Genomics
D Doerr, J Stoye
Bioinformatics and Phylogenetics, 361-372, 2019
Finding Teams in Graphs and Its Application to Spatial Gene Cluster Discovery
T Schulz, J Stoye, D Doerr
RECOMB International Workshop on Comparative Genomics, 197-212, 2017
Improved assemblies and comparison of two ancient Yersinia pestis genomes
N Luhmann, D Doerr, C Chauve
bioRxiv, 073445, 2016
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