Adam Hospital
Adam Hospital
Research Assistant, Instituto Nacional de bioinformática, IRB Barcelona
Verified email at irbbarcelona.org - Homepage
Title
Cited by
Cited by
Year
Parmbsc1: a refined force field for DNA simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature methods 13 (1), 55, 2016
3302016
A consensus view of protein dynamics
M Rueda, C Ferrer-Costa, T Meyer, A Pérez, J Camps, A Hospital, ...
Proceedings of the National Academy of Sciences 104 (3), 796-801, 2007
1882007
Molecular dynamics simulations: advances and applications.
A Hospital, JR Goñi, M Orozco, JL Gelpí
Advances and applications in bioinformatics and chemistry: AABC 8, 37-47, 2014
1562014
MoDEL (Molecular Dynamics Extended Library): a database of atomistic molecular dynamics trajectories
T Meyer, M D'Abramo, A Hospital, M Rueda, C Ferrer-Costa, A Pérez, ...
Structure 18 (11), 1399-1409, 2010
972010
FlexServ: an integrated tool for the analysis of protein flexibility
J Camps, O Carrillo, A Emperador, L Orellana, A Hospital, M Rueda, ...
Bioinformatics 25 (13), 1709-1710, 2009
882009
MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations
A Hospital, P Andrio, C Fenollosa, D Cicin-Sain, M Orozco, JL Gelpí
Bioinformatics 28 (9), 1278-1279, 2012
712012
Long-timescale dynamics of the Drew–Dickerson dodecamer
PD Dans, L Danilāne, I Ivani, T Dršata, F Lankaš, A Hospital, J Walther, ...
Nucleic acids research, gkw264, 2016
672016
How accurate are accurate force-fields for B-DNA?
PD Dans, I Ivani, A Hospital, G Portella, C González, M Orozco
Nucleic Acids Research, gkw1355, 2017
632017
Finding conformational transition pathways from discrete molecular dynamics simulations
P Sfriso, A Emperador, L Orellana, A Hospital, JL Gelpí, M Orozco
Journal of chemical theory and computation 8 (11), 4707-4718, 2012
272012
Coarse-grained representation of protein flexibility. Foundations, successes, and shortcomings
M Orozco, L Orellana, A Hospital, AN Naganathan, A Emperador, ...
Adv Protein Chem Struct Biol 85, 183-215, 2011
242011
BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data
A Hospital, P Andrio, C Cugnasco, L Codo, Y Becerra, PD Dans, ...
Nucleic acids research 44 (D1), D272-D278, 2016
232016
NAFlex: a web server for the study of nucleic acid flexibility
A Hospital, I Faustino, R Collepardo-Guevara, C González, JL Gelpí, ...
Nucleic acids research 41 (W1), W47-W55, 2013
212013
Parmbsc: a refined force field for dna simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature 201, 5, 2016
202016
Exploration of conformational transition pathways from coarse-grained simulations
P Sfriso, A Hospital, A Emperador, M Orozco
Bioinformatics 29 (16), 1980-1986, 2013
192013
The role of unconventional hydrogen bonds in determining BII propensities in B-DNA
A Balaceanu, M Pasi, PD Dans, A Hospital, R Lavery, M Orozco
The journal of physical chemistry letters 8 (1), 21-28, 2017
142017
Small details matter: the 2′-hydroxyl as a conformational switch in RNA
L Darré, I Ivani, PD Dans, H Gómez, A Hospital, M Orozco
Journal of the American Chemical Society 138 (50), 16355-16363, 2016
142016
The multiple roles of waters in protein solvation
A Hospital, M Candotti, JL Gelpí, M Orozco
The Journal of Physical Chemistry B 121 (15), 3636-3643, 2017
102017
Mechanism of structural tuning of the hepatitis C virus human cellular receptor CD81 large extracellular loop
ES Cunha, P Sfriso, AL Rojas, P Roversi, A Hospital, M Orozco, ...
Structure 25 (1), 53-65, 2017
102017
DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p
A Chakraborty, S Lyonnais, F Battistini, A Hospital, G Medici, R Prohens, ...
Nucleic Acids Research, gkw1147, 2016
102016
Molecular dynamics study of naturally existing cavity couplings in proteins
M Barbany, T Meyer, A Hospital, I Faustino, M D'Abramo, J Morata, ...
PloS one 10 (3), e0119978, 2015
82015
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