Paramvir Dehal
Paramvir Dehal
Verified email at lbl.gov
Title
Cited by
Cited by
Year
FastTree 2–approximately maximum-likelihood trees for large alignments
MN Price, PS Dehal, AP Arkin
PloS one 5 (3), 2010
50862010
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
MN Price, PS Dehal, AP Arkin
Molecular biology and evolution 26 (7), 1641-1650, 2009
21552009
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
S Aparicio, J Chapman, E Stupka, N Putnam, J Chia, P Dehal, ...
Science 297 (5585), 1301-1310, 2002
16432002
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins
P Dehal, Y Satou, RK Campbell, J Chapman, B Degnan, A De Tomaso, ...
Science 298 (5601), 2157-2167, 2002
16162002
Two rounds of whole genome duplication in the ancestral vertebrate
P Dehal, JL Boore
PLoS biology 3 (10), 2005
12342005
Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis
BM Tyler, S Tripathy, X Zhang, P Dehal, RHY Jiang, A Aerts, ...
Science 313 (5791), 1261-1266, 2006
9862006
Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis
TW Jeffries, IV Grigoriev, J Grimwood, JM Laplaza, A Aerts, A Salamov, ...
Nature biotechnology 25 (3), 319-326, 2007
5122007
TreeFam: a curated database of phylogenetic trees of animal gene families
H Li, A Coghlan, J Ruan, LJ Coin, JK Heriche, L Osmotherly, R Li, T Liu, ...
Nucleic acids research 34 (suppl_1), D572-D580, 2006
4622006
MicrobesOnline: an integrated portal for comparative and functional genomics
PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ...
Nucleic acids research 38 (suppl_1), D396-D400, 2010
4082010
Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome
L Baxter, S Tripathy, N Ishaque, N Boot, A Cabral, E Kemen, M Thines, ...
science 330 (6010), 1549-1551, 2010
3902010
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis
SB Goodwin, SB M'Barek, B Dhillon, AHJ Wittenberg, CF Crane, JK Hane, ...
PLoS genetics 7 (6), 2011
3832011
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
3692008
The DNA sequence and biology of human chromosome 19
J Grimwood, LA Gordon, A Olsen, A Terry, J Schmutz, J Lamerdin, ...
Nature 428 (6982), 529-535, 2004
2602004
Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii
NFW Saunders, T Thomas, PMG Curmi, JS Mattick, E Kuczek, R Slade, ...
Genome research 13 (7), 1580-1588, 2003
2502003
Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution
P Dehal, P Predki, AS Olsen, A Kobayashi, P Folta, S Lucas, M Land, ...
Science 293 (5527), 104-111, 2001
2322001
Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli
MN Price, PS Dehal, AP Arkin
Genome biology 9 (1), R4, 2008
1302008
Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough
A Mukhopadhyay, AM Redding, MP Joachimiak, AP Arkin, SE Borglin, ...
Journal of bacteriology 189 (16), 5996-6010, 2007
1122007
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566, 2018
1052018
Orthologous transcription factors in bacteria have different functions and regulate different genes
MN Price, PS Dehal, AP Arkin
PLoS computational biology 3 (9), 2007
1032007
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
PS Dehal, JL Boore
BMC bioinformatics 7 (1), 201, 2006
722006
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Articles 1–20