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John Quackenbush
John Quackenbush
Harvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-Farber
Bestätigte E-Mail-Adresse bei hsph.harvard.edu
Titel
Zitiert von
Zitiert von
Jahr
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Arabidopsis Genome Initiative genomeanalysis@ tgr. org genomeanalysis@ gsf. de
nature 408 (6814), 796-815, 2000
107982000
TM4: a free, open-source system for microarray data management and analysis
AI Saeed, V Sharov, J White, J Li, W Liang, N Bhagabati, J Braisted, ...
Biotechniques 34 (2), 374-378, 2003
52912003
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ...
Nature genetics 29 (4), 365-371, 2001
47742001
The complete genome sequence of the gastric pathogen Helicobacter pylori
JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, ...
Nature 388 (6642), 539-547, 1997
42891997
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach
HJWL Aerts, ER Velazquez, RTH Leijenaar, C Parmar, P Grossmann, ...
Nature communications 5 (1), 4006, 2014
41432014
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
39032005
Microarray data normalization and transformation
J Quackenbush
Nature genetics 32 (4), 496-501, 2002
27502002
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
CM Fraser, S Casjens, WM Huang, GG Sutton, R Clayton, R Lathigra, ...
Nature 390 (6660), 580-586, 1997
25601997
Computational analysis of microarray data
J Quackenbush
Nature reviews genetics 2 (6), 418-427, 2001
21832001
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
RIKEN Genome Exploration Research Group Phase I Team: Carninci P. 2 Hayatsu ...
Nature 420 (6915), 563-573, 2002
20592002
Genesis: cluster analysis of microarray data
A Sturn, J Quackenbush, Z Trajanoski
Bioinformatics 18 (1), 207-208, 2002
20342002
Artificial intelligence in radiology
A Hosny, C Parmar, J Quackenbush, LH Schwartz, HJWL Aerts
Nature Reviews Cancer 18 (8), 500-510, 2018
19252018
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
G Pertea, X Huang, F Liang, V Antonescu, R Sultana, S Karamycheva, ...
Bioinformatics 19 (5), 651-652, 2003
18692003
[9] TM4 microarray software suite
AI Saeed, NK Bhagabati, JC Braisted, W Liang, V Sharov, EA Howe, J Li, ...
Methods in enzymology 411, 134-193, 2006
18282006
The molecular portraits of breast tumors are conserved across microarray platforms
Z Hu, C Fan, DS Oh, JS Marron, X He, BF Qaqish, C Livasy, LA Carey, ...
BMC genomics 7 (1), 1-12, 2006
17972006
Corrections: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
HP Klenk, RA Clayton, JF Tomb, O White, KE Nelson, KA Ketchum, ...
Nature 394 (6688), 101, 1998
1706*1998
Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
JI Herschkowitz, K Simin, VJ Weigman, I Mikaelian, J Usary, Z Hu, ...
Genome biology 8, 1-17, 2007
15802007
A concise guide to cDNA microarray analysis
P Hegde, R Qi, K Abernathy, C Gay, S Dharap, R Gaspard, JE Hughes, ...
Biotechniques 29 (3), 548-562, 2000
13612000
A gene map of the human genome
GD Schuler, MS Boguski, EA Stewart, LD Stein, G Gyapay, K Rice, ...
Science 274 (5287), 540-546, 1996
13591996
Multiple-laboratory comparison of microarray platforms
RA Irizarry, D Warren, F Spencer, IF Kim, S Biswal, BC Frank, ...
Nature methods 2 (5), 345-350, 2005
10452005
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