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Alex Reynolds
Alex Reynolds
Altius Institute for Biosciences
Bestätigte E-Mail-Adresse bei altius.org
Titel
Zitiert von
Zitiert von
Jahr
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
138252012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
59522015
Systematic localization of common disease-associated variation in regulatory DNA
MT Maurano, R Humbert, E Rynes, RE Thurman, E Haugen, H Wang, ...
Science 337 (6099), 1190-1195, 2012
38002012
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
30422012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
18972014
An expansive human regulatory lexicon encoded in transcription factor footprints
S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ...
Nature 489 (7414), 83-90, 2012
9462012
BEDOPS: high-performance genomic feature operations
S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ...
Bioinformatics 28 (14), 1919-1920, 2012
8812012
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
7972018
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
JR Hesselberth, X Chen, Z Zhang, PJ Sabo, R Sandstrom, AP Reynolds, ...
Nature methods 6 (4), 283-289, 2009
7222009
Cell-of-origin chromatin organization shapes the mutational landscape of cancer
P Polak, R Karlić, A Koren, R Thurman, R Sandstrom, MS Lawrence, ...
Nature 518 (7539), 360-364, 2015
5752015
Circuitry and dynamics of human transcription factor regulatory networks
S Neph, AB Stergachis, A Reynolds, R Sandstrom, E Borenstein, ...
Cell 150 (6), 1274-1286, 2012
5222012
Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification
RM Samstein, A Arvey, SZ Josefowicz, X Peng, A Reynolds, R Sandstrom, ...
Cell 151 (1), 153-166, 2012
5022012
Developmental fate and cellular maturity encoded in human regulatory DNA landscapes
AB Stergachis, S Neph, A Reynolds, R Humbert, B Miller, SL Paige, ...
Cell 154 (4), 888-903, 2013
3722013
Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution
A Mayer, J Di Iulio, S Maleri, U Eser, J Vierstra, A Reynolds, R Sandstrom, ...
Cell 161 (3), 541-554, 2015
3672015
Exonic transcription factor binding directs codon choice and affects protein evolution
AB Stergachis, E Haugen, A Shafer, W Fu, B Vernot, A Reynolds, ...
Science 342 (6164), 1367-1372, 2013
3402013
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana
AM Sullivan, AA Arsovski, J Lempe, KL Bubb, MT Weirauch, PJ Sabo, ...
Cell reports 8 (6), 2015-2030, 2014
2642014
Global reference mapping of human transcription factor footprints
J Vierstra, J Lazar, R Sandstrom, J Halow, K Lee, D Bates, M Diegel, ...
Nature 583 (7818), 729-736, 2020
2542020
Conservation of trans-acting circuitry during mammalian regulatory evolution
AB Stergachis, S Neph, R Sandstrom, E Haugen, AP Reynolds, M Zhang, ...
Nature 515 (7527), 365-370, 2014
2402014
Index and biological spectrum of human DNase I hypersensitive sites
W Meuleman, A Muratov, E Rynes, J Halow, K Lee, D Bates, M Diegel, ...
Nature 584 (7820), 244-251, 2020
2212020
Genome‐scale mapping of DNase I hypersensitivity
S John, PJ Sabo, TK Canfield, K Lee, S Vong, M Weaver, H Wang, ...
Current protocols in molecular biology 103 (1), 21.27. 1-21.27. 20, 2013
1132013
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