Pablo D. Dans
Pablo D. Dans
Department of Biological Sciences (CENUR North Riverside) & Institut Pasteur de Montevideo
Verified email at pasteur.edu.uy - Homepage
Title
Cited by
Cited by
Year
Parmbsc1: a refined force field for DNA simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, J Walther, P Andrio, R Goñi, ...
Nature methods 13 (1), 55, 2016
335*2016
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA
M Pasi, JH Maddocks, D Beveridge, TC Bishop, DA Case, T Cheatham III, ...
Nucleic acids research 42 (19), 12272-12283, 2014
1302014
A coarse grained model for atomic-detailed DNA simulations with explicit electrostatics
PD Dans, A Zeida, MR Machado, S Pantano
Journal of chemical theory and computation 6 (5), 1711-1725, 2010
1222010
Direct measurement of the dielectric polarization properties of DNA
A Cuervo, PD Dans, JL Carrascosa, M Orozco, G Gomila, L Fumagalli
Proceedings of the National Academy of Sciences 111 (35), E3624-E3630, 2014
1052014
Another coarse grain model for aqueous solvation: WAT FOUR?
L Darré, MR Machado, PD Dans, FE Herrera, S Pantano
Journal of Chemical Theory and Computation 6 (12), 3793-3807, 2010
922010
Multiscale simulation of DNA
PD Dans, J Walther, H Gómez, M Orozco
Current opinion in structural biology 37, 29-45, 2016
882016
The structural impact of DNA mismatches
G Rossetti, PD Dans, I Gomez-Pinto, I Ivani, C Gonzalez, M Orozco
Nucleic acids research 43 (8), 4309-4321, 2015
782015
Exploring polymorphisms in B-DNA helical conformations
PD Dans, A Perez, I Faustino, R Lavery, M Orozco
Nucleic acids research 40 (21), 10668-10678, 2012
722012
Long-timescale dynamics of the Drew–Dickerson dodecamer
PD Dans, L Danilāne, I Ivani, T Dršata, F Lankaš, A Hospital, J Walther, ...
Nucleic acids research 44 (9), 4052-4066, 2016
68*2016
Switching reversibility to irreversibility in glycogen synthase kinase 3 inhibitors: clues for specific design of new compounds
DI Perez, V Palomo, C Pérez, C Gil, PD Dans, FJ Luque, S Conde, ...
Journal of Medicinal Chemistry 54 (12), 4042-4056, 2011
682011
Connecting proline and γ-aminobutyric acid in stressed plants through non-enzymatic reactions
S Signorelli, PD Dans, EL Coitiño, O Borsani, J Monza
PLoS One 10 (3), e0115349, 2015
662015
How accurate are accurate force-fields for B-DNA?
PD Dans, I Ivani, A Hospital, G Portella, C González, M Orozco
Nucleic acids research 45 (7), 4217-4230, 2017
65*2017
Unraveling the sequence-dependent polymorphic behavior of d (CpG) steps in B-DNA
PD Dans, I Faustino, F Battistini, K Zakrzewska, R Lavery, M Orozco
Nucleic acids research 42 (18), 11304-11320, 2014
602014
A hybrid all-atom/coarse grain model for multiscale simulations of DNA
MR Machado, PD Dans, S Pantano
Physical Chemistry Chemical Physics 13 (40), 18134-18144, 2011
462011
Breathing, bubbling, and bending: DNA flexibility from multimicrosecond simulations
A Zeida, MR Machado, PD Dans, S Pantano
Physical Review E 86 (2), 021903, 2012
402012
Glyceraldehyde-3-phosphate dehydrogenase is a chaperone that allocates labile heme in cells
EA Sweeny, AB Singh, R Chakravarti, O Martinez-Guzman, A Saini, ...
Journal of Biological Chemistry 293 (37), 14557-14568, 2018
332018
Saturation of recognition elements blocks evolution of new tRNA identities
A Saint-Léger, C Bello, PD Dans, AG Torres, EM Novoa, N Camacho, ...
Science advances 2 (4), e1501860, 2016
262016
BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data
A Hospital, P Andrio, C Cugnasco, L Codo, Y Becerra, PD Dans, ...
Nucleic acids research 44 (D1), D272-D278, 2016
232016
Subcellular localization of the interaction between the human immunodeficiency virus transactivator Tat and the nucleosome assembly protein 1
A De Marco, PD Dans, A Knezevich, P Maiuri, S Pantano, A Marcello
Amino acids 38 (5), 1583-1593, 2010
202010
Structural and energetic study of cisplatin and derivatives: Comparison of the performance of density funtional theory implementations
PD Dans, A Crespo, DA Estrin, EL Coitiño
Journal of chemical theory and computation 4 (5), 740-750, 2008
182008
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Articles 1–20