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yinxiu Zhan
yinxiu Zhan
Istituto Europeo di Oncologia
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Jahr
Nonlinear control of transcription through enhancer–promoter interactions
J Zuin, G Roth, Y Zhan, J Cramard, J Redolfi, E Piskadlo, P Mach, ...
Nature 604 (7906), 571-577, 2022
2222022
The dynamics of mRNA turnover revealed by single-molecule imaging in single cells
I Horvathova, F Voigt, AV Kotrys, Y Zhan, CG Artus-Revel, J Eglinger, ...
Molecular cell 68 (3), 615-625. e9, 2017
1912017
Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes
Y Zhan, L Mariani, I Barozzi, EG Schulz, N Blüthgen, M Stadler, G Tiana, ...
Genome research 27 (3), 479-490, 2017
1912017
Single-molecule imaging of mRNA localization and regulation during the integrated stress response
JH Wilbertz, F Voigt, I Horvathova, G Roth, Y Zhan, JA Chao
Molecular cell 73 (5), 946-958. e7, 2019
1362019
HP1 drives de novo 3D genome reorganization in early Drosophila embryos
F Zenk, Y Zhan, P Kos, E Löser, N Atinbayeva, M Schächtle, G Tiana, ...
Nature 593 (7858), 289-293, 2021
852021
Cohesin and CTCF control the dynamics of chromosome folding
P Mach, PI Kos, Y Zhan, J Cramard, S Gaudin, J Tünnermann, E Marchi, ...
Nature genetics 54 (12), 1907-1918, 2022
822022
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation
J Redolfi, Y Zhan, C Valdes-Quezada, M Kryzhanovska, I Guerreiro, ...
Nature structural & molecular biology 26 (6), 471-480, 2019
772019
The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist
JG Van Bemmel, R Galupa, C Gard, N Servant, C Picard, J Davies, ...
Nature genetics 51 (6), 1024-1034, 2019
652019
A conserved noncoding locus regulates random monoallelic Xist expression across a topological boundary
R Galupa, EP Nora, R Worsley-Hunt, C Picard, C Gard, JG van Bemmel, ...
Molecular cell 77 (2), 352-367. e8, 2020
492020
Live-cell imaging and physical modeling reveal control of chromosome folding dynamics by cohesin and CTCF
P Mach, PI Kos, Y Zhan, J Cramard, S Gaudin, J Tünnermann, E Marchi, ...
BioRxiv, 2022.03. 03.482826, 2022
222022
deepBlink: threshold-independent detection and localization of diffraction-limited spots
BT Eichenberger, YX Zhan, M Rempfler, L Giorgetti, JA Chao
Nucleic Acids Research 49 (13), 7292-7297, 2021
202021
Modelling genome-wide topological associating domains in mouse embryonic stem cells
Y Zhan, L Giorgetti, G Tiana
Chromosome Research 25, 5-14, 2017
172017
MonteGrappa: an iterative Monte Carlo program to optimize biomolecular potentials in simplified models
G Tiana, F Villa, Y Zhan, R Capelli, C Paissoni, P Sormanni, E Heard, ...
Computer Physics Communications 186, 93-104, 2015
132015
Inversion of a topological domain leads to restricted changes in its gene expression and affects interdomain communication
R Galupa, C Picard, N Servant, EP Nora, Y Zhan, JG van Bemmel, ...
Development 149 (9), dev200568, 2022
92022
Effective model of loop extrusion predicts chromosomal domains
M Crippa, Y Zhan, G Tiana
Physical Review E 102 (3), 032414, 2020
72020
Looping probability of random heteropolymers helps to understand the scaling properties of biopolymers
Y Zhan, L Giorgetti, G Tiana
Physical Review E 94 (3), 032402, 2016
62016
Bifractal nature of chromosome contact maps
S Pigolotti, MH Jensen, Y Zhan, G Tiana
Physical Review Research 2 (4), 043078, 2020
52020
Analyzing the Genome-Wide Distribution of Histone Marks by CUT&Tag in Drosophila Embryos
F Zenk, F Cardamone, DA Ibarra Morales, N Atinbayeva, Y Zhan, N Iovino
Polycomb Group Proteins: Methods and Protocols, 1-17, 2023
12023
Intra-and interchromosomal contact mapping reveals the Igh locus has extensive conformational heterogeneity and interacts with B-lineage genes
O Mielczarek, CH Rogers, Y Zhan, LS Matheson, MJT Stubbington, ...
Cell Reports 42 (9), 2023
2023
Locality of contacts determines the subdiffusion exponents in polymeric models of chromatin
E Marchi, Y Zhan, G Tiana
Physical Review E 107 (6), 064406, 2023
2023
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