Jaak Vilo
Jaak Vilo
Prof. of Bioinformatics, Institute of Computer Science, University of Tartu, Estonia
Verified email at ut.ee - Homepage
TitleCited byYear
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ...
Nature genetics 29 (4), 365, 2001
42662001
ArrayExpress—a public repository for microarray gene expression data at the EBI
A Brazma, H Parkinson, U Sarkans, M Shojatalab, J Vilo, ...
Nucleic acids research 31 (1), 68-71, 2003
9192003
Gene expression data analysis
A Brazma, J Vilo
FEBS letters 480 (1), 17-24, 2000
7592000
g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments
J Reimand, M Kull, H Peterson, J Hansen, J Vilo
Nucleic acids research 35 (suppl_2), W193-W200, 2007
5522007
A first-generation linkage disequilibrium map of human chromosome 22
E Dawson, GR Abecasis, S Bumpstead, Y Chen, S Hunt, DM Beare, ...
Nature 418 (6897), 544, 2002
4952002
g: Profiler—a web server for functional interpretation of gene lists (2016 update)
J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo
Nucleic acids research, gkw199, 2016
4892016
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
T Metsalu, J Vilo
Nucleic acids research 43 (W1), W566-W570, 2015
4582015
Predicting gene regulatory elements in silico on a genomic scale
A Brāzma, I Jonassen, J Vilo, E Ukkonen
Genome research 8 (11), 1202-1215, 1998
4451998
g: Profiler—a web server for functional interpretation of gene lists (2011 update)
J Reimand, T Arak, J Vilo
Nucleic acids research 39 (suppl_2), W307-W315, 2011
4432011
Robust rank aggregation for gene list integration and meta-analysis
R Kolde, S Laur, P Adler, J Vilo
Bioinformatics 28 (4), 573-580, 2012
2782012
Protein interaction verification and functional annotation by integrated analysis of genome-scale data
P Kemmeren, NL van Berkum, J Vilo, T Bijma, R Donders, A Brazma, ...
Molecular cell 9 (5), 1133-1143, 2002
2562002
DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns
K Lokk, V Modhukur, B Rajashekar, K Märtens, R Mägi, R Kolde, ...
Genome biology 15 (4), 3248, 2014
1862014
Meta‐analysis of microRNA expression in lung cancer
U Võsa, T Vooder, R Kolde, J Vilo, A Metspalu, T Annilo
International journal of cancer 132 (12), 2884-2893, 2013
1832013
Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach
AK Krug, R Kolde, JA Gaspar, E Rempel, NV Balmer, K Meganathan, ...
Archives of Toxicology, 1-21, 2012
1612012
Expression Profiler: next generation—an online platform for analysis of microarray data
M Kapushesky, P Kemmeren, AC Culhane, S Durinck, J Ihmels, C Körner, ...
Nucleic acids research 32 (suppl_2), W465-W470, 2004
1362004
Mining for putative regulatory elements in the yeast genome using gene expression data.
J Vilo, A Brazma, I Jonassen, AJ Robinson, E Ukkonen
Ismb 2000, 384-394, 2000
1362000
MicroRNA expression profiles of human blood monocyte-derived dendritic cells and macrophages reveal miR-511 as putative positive regulator of Toll-like receptor 4
L Tserel, T Runnel, K Kisand, M Pihlap, L Bakhoff, R Kolde, H Peterson, ...
Journal of Biological Chemistry 286 (30), 26487-26495, 2011
1262011
Identification of miR‐374a as a prognostic marker for survival in patients with early‐stage nonsmall cell lung cancer
U Võsa, T Vooder, R Kolde, K Fischer, K Välk, N Tõnisson, R Roosipuu, ...
Genes, Chromosomes and Cancer 50 (10), 812-822, 2011
1202011
Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods
P Adler, R Kolde, M Kull, A Tkachenko, H Peterson, J Reimand, J Vilo
Genome biology 10 (12), R139, 2009
1162009
ASTD: the alternative splicing and transcript diversity database
G Koscielny, V Le Texier, C Gopalakrishnan, V Kumanduri, JJ Riethoven, ...
Genomics 93 (3), 213-220, 2009
1112009
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Articles 1–20