| Dissecting the stochastic transcription initiation process in live Escherichia coli J Lloyd-Price, S Startceva, V Kandavalli, JG Chandraseelan, N Goncalves, ... DNA Research 23 (3), 203-214, 2016 | 53 | 2016 |
| Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements SMD Oliveira, A Häkkinen, J Lloyd-Price, H Tran, V Kandavalli, ... PLoS computational biology 12 (10), e1005174, 2016 | 38 | 2016 |
| Novel TCAP Mutation c.32C>A Causing Limb Girdle Muscular Dystrophy 2G A Francis, B Sunitha, K Vinodh, K Polavarapu, SK Katkam, S Modi, ... PLoS One 9 (7), e102763, 2014 | 29 | 2014 |
| Effects of σ factor competition are promoter initiation kinetics dependent VK Kandavalli, H Tran, AS Ribeiro Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (10 …, 2016 | 27 | 2016 |
| Rapid antibiotic susceptibility testing and species identification for mixed samples V Kandavalli, P Karempudi, J Larsson, J Elf Nature communications 13 (1), 6215, 2022 | 20 | 2022 |
| Rate-limiting steps in transcription dictate sensitivity to variability in cellular components J Mäkelä, V Kandavalli, AS Ribeiro Scientific Reports 7 (1), 10588, 2017 | 15 | 2017 |
| Analytical kinetic model of native tandem promoters in E. coli V Chauhan, MNM Bahrudeen, CSD Palma, ISC Baptista, BLB Almeida, ... PLoS Computational Biology 18 (1), e1009824, 2022 | 8 | 2022 |
| Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression S Startceva, VK Kandavalli, A Visa, AS Ribeiro Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1862 (2), 119-128, 2019 | 8 | 2019 |
| Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry MNM Bahrudeen, V Chauhan, CSD Palma, SMD Oliveira, VK Kandavalli, ... Journal of microbiological methods 166, 105745, 2019 | 7 | 2019 |
| Sequence-dependent model of genes with dual σ factor preference ISC Baptista, V Kandavalli, V Chauhan, MNM Bahrudeen, BLB Almeida, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1865 (3), 194812, 2022 | 6* | 2022 |
| Effects of σ factor competition on the in vivo kinetics of transcription initiation in Escherichia coli VK Kandavalli, H Tran, AS Ribeiro BBA Gene Regulatory Mechanisms 1859, 1281-1288, 2016 | 6 | 2016 |
| Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup CSD Palma, V Kandavalli, MNM Bahrudeen, M Minoia, V Chauhan, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (5), 194515, 2020 | 5 | 2020 |
| Chromosome and plasmid-borne PLacO3O1 promoters differ in sensitivity to critically low temperatures SMD Oliveira, NSM Goncalves, VK Kandavalli, L Martins, ... Scientific Reports 9 (1), 4486, 2019 | 5 | 2019 |
| Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy E Hallström, V Kandavalli, P Ranefall, J Elf, C Wählby PLoS Computational Biology 19 (11), e1011181, 2023 | 1 | 2023 |
| The transcription factor network of E. coli steers global responses to shifts in RNAP concentration B LB Almeida, MN M. Bahrudeen, V Chauhan, S Dash, V Kandavalli, ... Nucleic Acids Research 50 (12), 6801-6819, 2022 | 1 | 2022 |
| Efficiency and Robustness of Processes Driven by Nucleoid Exclusion in Escherichia coli I Baptista, V Chauhan, B Almeida, V Kandavalli, AS Ribeiro Physical Microbiology, 59-80, 2020 | 1 | 2020 |
| Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli SMD Oliveira, MNM Bahrudeen, S Startceva, V Kandavalli, AS Ribeiro International Conference on Computational Methods in Systems Biology, 3-20, 2018 | 1 | 2018 |
| Temperature Dependence of Leakiness of Transcription Repression Mechanisms N Goncalves, SMD Oliveira, VK Kandavalli Computational Methods in Systems Biology: 14th International Conference …, 2016 | 1 | 2016 |
| A library of reporters of the global regulators of gene expression of Escherichia coli S Dash, R Jagadeesan, ISC Baptista, V Chauhan, V Kandavalli, ... bioRxiv, 2023.11. 28.568972, 2023 | | 2023 |
| Rapid antibiotic susceptibility testing and species identification for mixed infections V Kandavalli, P Karempudi, J Larsson, J Elf bioRxiv, 2021.11. 10.468026, 2021 | | 2021 |
Andre S. RibeiroTampere UniversityVerified email at tuni.fi
