Vinodh Kandavalli
Title
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Cited by
Year
Dissecting the stochastic transcription initiation process in live Escherichia coli
J Lloyd-Price, S Startceva, V Kandavalli, JG Chandraseelan, N Goncalves, ...
DNA Research 23 (3), 203-214, 2016
392016
Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements
SMD Oliveira, A Häkkinen, J Lloyd-Price, H Tran, V Kandavalli, ...
PLoS computational biology 12 (10), e1005174, 2016
212016
Effects of σ factor competition are promoter initiation kinetics dependent
VK Kandavalli, H Tran, AS Ribeiro
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (10 …, 2016
202016
Novel TCAP mutation c. 32C> A causing limb girdle muscular dystrophy 2G
A Francis, B Sunitha, K Vinodh, K Polavarapu, SK Katkam, S Modi, ...
Plos one 9 (7), e102763, 2014
152014
Rate-limiting steps in transcription dictate sensitivity to variability in cellular components
J Mäkelä, V Kandavalli, AS Ribeiro
Scientific reports 7 (1), 1-10, 2017
142017
Effects of σ factor competition on the in vivo kinetics of transcription initiation in Escherichia coli
VK Kandavalli, H Tran, AS Ribeiro
BBA Gene Regulatory Mechanisms 1859, 1281-1288, 2016
72016
Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression
S Startceva, VK Kandavalli, A Visa, AS Ribeiro
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1862 (2), 119-128, 2019
32019
Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry
MNM Bahrudeen, V Chauhan, CSD Palma, SMD Oliveira, VK Kandavalli, ...
Journal of microbiological methods 166, 105745, 2019
22019
Chromosome and plasmid-borne P LacO3O1 promoters differ in sensitivity to critically low temperatures
SMD Oliveira, NSM Goncalves, VK Kandavalli, L Martins, ...
Scientific reports 9 (1), 1-15, 2019
22019
Temperature Dependence of Leakiness of Transcription Repression Mechanisms
N Goncalves, SMD Oliveira, VK Kandavalli
Computational Methods in Systems Biology: 14th International Conference …, 2016
12016
Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup
CSD Palma, V Kandavalli, MNM Bahrudeen, M Minoia, V Chauhan, ...
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (5), 194515, 2020
2020
Efficiency and Robustness of Processes Driven by Nucleoid Exclusion in Escherichia coli
I Baptista, V Chauhan, B Almeida, V Kandavalli, AS Ribeiro
Physical Microbiology, 59-80, 2020
2020
Rate-limiting Steps in Transcription Initiation are Key Regulatory Mechanisms of Escherichia coli Gene Expression Dynamics
V Kandavalli
Tampere University, 2020
2020
Chromosome and plasmid-borne PLacO3O1 promoters differ in sensitivity to critically low temperatures
O Samuel, GN SM, VK Kandavalli, L Martins, NV Ramakanth, R Jan, ...
Scientific Reports (Nature Publisher Group) 9 (1), 2019
2019
Mean and Variability in RNA Polymerase Numbers Are Correlated to the Mean but Not the Variability in Size and Composition of Escherichia Coli Cells.
B Almeida, V Chauhan, V Kandavalli, AS Ribeiro
BIOINFORMATICS, 226-233, 2019
2019
Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli
SMD Oliveira, MNM Bahrudeen, S Startceva, V Kandavalli, AS Ribeiro
International Conference on Computational Methods in Systems Biology, 3-20, 2018
2018
Transcription initiation controls skewness of the distribution of intervals between RNA productions
V Kandavalli, S Startceva, A Ribeiro
Proceedings of the 31st European Simulation and Modelling, 418-421, 2017
2017
Effects of the Dynamics of the Steps in Transcription Initiation on the Asymmetry of the Distribution of Time Intervals Between Consecutive RNA Productions
S Startceva, VK Kandavalli, A Visa, A Sanches Ribeiro
Computational Methods in Systems Biology: 15th International Conference …, 2017
2017
Promoter initiation kinetics determines its sensitivity to changes in σ factor numbers in Escherichia coli
V Kandavalli, H Tran, J Chandraseelan, AS Ribeiro
Congress of Microbiology and Biotechnology, 2015
2015
The role of different σ factors in the dynamics of transcription during the exponential growth phase
V Kandavalli, H Tran, J Chandraseelan, C Ferreira, JM Fonseca, ...
Proceedings of the Symposium on Views into Nuclear Function,Patras, Greece, 2014
2014
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Articles 1–20