Francesco Pontiggia
Francesco Pontiggia
Verified email at g.harvard.edu
Title
Cited by
Cited by
Year
Molecular mechanism of Aurora A kinase autophosphorylation and its allosteric activation by TPX2
A Zorba, V Buosi, S Kutter, N Kern, F Pontiggia, YJ Cho, D Kern
Elife 3, e02667, 2014
982014
The energy landscape of adenylate kinase during catalysis
SJ Kerns, RV Agafonov, YJ Cho, F Pontiggia, R Otten, DV Pachov, ...
Nature structural & molecular biology 22 (2), 124, 2015
922015
Coarse-grained description of protein internal dynamics: an optimal strategy for decomposing proteins in rigid subunits
R Potestio, F Pontiggia, C Micheletti
Biophysical journal 96 (12), 4993-5002, 2009
782009
Small-and large-scale conformational changes of adenylate kinase: a molecular dynamics study of the subdomain motion and mechanics
F Pontiggia, A Zen, C Micheletti
Biophysical journal 95 (12), 5901-5912, 2008
782008
Free energy landscape of activation in a signalling protein at atomic resolution
F Pontiggia, DV Pachov, MW Clarkson, J Villali, MF Hagan, VS Pande, ...
Nature communications 6 (1), 1-14, 2015
532015
Anharmonicity and self-similarity of the free energy landscape of protein G
F Pontiggia, G Colombo, C Micheletti, H Orland
Physical review letters 98 (4), 048102, 2007
462007
PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains
T Aleksiev, R Potestio, F Pontiggia, S Cozzini, C Micheletti
Bioinformatics 25 (20), 2743-2744, 2009
452009
ALADYN: a web server for aligning proteins by matching their large-scale motion
R Potestio, T Aleksiev, F Pontiggia, S Cozzini, C Micheletti
Nucleic acids research 38 (suppl_2), W41-W45, 2010
322010
Conformational selection in a protein-protein interaction revealed by dynamic pathway analysis
KS Chakrabarti, RV Agafonov, F Pontiggia, R Otten, MK Higgins, ...
Cell reports 14 (1), 32-42, 2016
312016
Essential dynamics of helices provide a functional classification of EF-hand proteins
F Capozzi, C Luchinat, C Micheletti, F Pontiggia
Journal of proteome research 6 (11), 4245-4255, 2007
292007
Structural and dynamical alignment of enzymes with partial structural similarity
V Carnevale, F Pontiggia, C Micheletti
Journal of Physics: Condensed Matter 19 (28), 285206, 2007
272007
Evidence against the “Y–T coupling” mechanism of activation in the response regulator NtrC
J Villali, F Pontiggia, MW Clarkson, MF Hagan, D Kern
Journal of molecular biology 426 (7), 1554-1567, 2014
222014
Multiscale Approaches to Protein Modeling
C Czaplewski, A Liwo, M Makowski, S Ołdziej, HA Scheraga
Springer, 2010
17*2010
Protein structure and functionally-oriented dynamics: from atomistic to coarse-grained models
F Pontiggia
SISSA, 2008
22008
Bridging the Atomic and Coarse-Grained Descriptions of Collective Motions in Proteins
V Carnevale, C Micheletti, F Pontiggia, R Potestio
Multiscale Approaches to Protein Modeling, 159-178, 2011
12011
Activation Mechanism of a Signaling Protein at Atomic Resolution
F Pontiggia, DV Pachov, MW Clarkson, J Villali, MF Hagan, VS Pande, ...
Biophysical Journal 108 (2), 376a, 2015
2015
Atomistic simulations of the MS2 coat protein conformational transition
M Perkett, F Pontiggia, M Hagan
APS 2012, P40. 001, 2012
2012
Pisqrd: A Novel Variational Scheme to Identify Dinamical Domains in Proteins
R Potestio, F Pontiggia, T Aleksiev, S Cozzini, C Micheletti
Biophysical Journal 98 (3), 237a, 2010
2010
Supporting Material Coarse-grained description of protein internal dynamics: an optimal strategy for decomposing proteins in rigid subunits
R Potestio, F Pontiggia, C Micheletti
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Articles 1–19