Follow
Zhifeng (Francis) Jing
Zhifeng (Francis) Jing
Qubit Pharmaceuticals
Verified email at qubit-pharmaceuticals.com
Title
Cited by
Cited by
Year
Polarizable force fields for biomolecular simulations: Recent advances and applications
Z Jing, C Liu, SY Cheng, R Qi, BD Walker, JP Piquemal, P Ren
Annual Review of Biophysics 48, 371-394, 2019
3212019
[pi]-[pi] interaction of aromatic groups in amphiphilic molecules directing for single-crystalline mesostructured zeolite nanosheets
D Xu, Y Ma, Z Jing, L Han, B Singh, J Feng, X Shen, F Cao, P Oleynikov, ...
Nature communications 5, 4262, 2014
2432014
AMOEBA Polarizable Atomic Multipole Force Field for Nucleic Acids
C Zhang, C Lu, Z Jing, C Wu, JP Piquemal, JW Ponder, P Ren
Journal of Chemical Theory and Computation 14 (4), 2084-2108, 2018
2162018
Tinker-HP: a Massively Parallel Molecular Dynamics Package for Multiscale Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields
L Lagardère, LH Jolly, F Lipparini, F Aviat, B Stamm, Z Jing, M Harger, ...
Chemical Science 9 (4), 956-972, 2017
1992017
Robust Antibacterial Activity of Tungsten Oxide (WO3-X) Nanodots
G Duan, L Chen, Z Jing, P De Luna, L Wen, L Zhang, L Zhao, J Xu, Z Li, ...
Chemical Research in Toxicology 32 (7), 1357-1366, 2019
832019
Many-body effect determines the selectivity for Ca2+ and Mg2+ in proteins
Z Jing, C Liu, R Qi, P Ren
Proceedings of the National Academy of Sciences 115 (32), E7495-E7501, 2018
812018
Biocompatible and blood–brain barrier permeable carbon dots for inhibition of Aβ fibrillation and toxicity, and BACE1 activity
X Han, Z Jing, W Wu, B Zou, Z Peng, P Ren, A Wikramanayake, Z Lu, ...
Nanoscale 9 (35), 12862-12866, 2017
702017
Surfactants with Aromatic-Group Tail and Single Quaternary Ammonium Head for Directing Single-Crystalline Mesostructured Zeolite Nanosheets
D Xu, Z Jing, F Cao, H Sun, S Che
Chemistry of Materials 26 (15), 4612-4619, 2014
652014
Study of interactions between metal ions and protein model compounds by energy decomposition analyses and the AMOEBA force field
Z Jing, R Qi, C Liu, P Ren
The Journal of Chemical Physics 147 (16), 161733, 2017
582017
Calculating binding free energies of host–guest systems using the AMOEBA polarizable force field
DR Bell, R Qi, Z Jing, JY Xiang, C Mejias, MJ Schnieders, JW Ponder, ...
Physical Chemistry Chemical Physics 18 (44), 30261-30269, 2016
522016
Thermodynamics of ion binding and occupancy in potassium channels
Z Jing, JA Rackers, LR Pratt, C Liu, SB Rempe, P Ren
Chemical science 12 (25), 8920-8930, 2021
312021
Hierarchical atom type definitions and extensible all‐atom force fields
Z Jin, C Yang, F Cao, F Li, Z Jing, L Chen, Z Shen, L Xin, S Tong, H Sun
Journal of Computational Chemistry 37 (7), 653-664, 2016
282016
Elucidating the phosphate binding mode of phosphate-binding protein: The critical effect of buffer solution
R Qi, Z Jing, C Liu, JP Piquemal, KN Dalby, P Ren
The Journal of Physical Chemistry B 122 (24), 6371-6376, 2018
272018
Computationally driven discovery of SARS-CoV-2 M pro inhibitors: from design to experimental validation
L El Khoury, Z Jing, A Cuzzolin, A Deplano, D Loco, B Sattarov, F Hédin, ...
Chemical Science 13 (13), 3674-3687, 2022
232022
A Comment on the Reweighting Method for Accelerated Molecular Dynamics
Z Jing, H Sun
Journal of Chemical Theory and Computation 11 (6), 2395-2397, 2015
192015
Replica Exchange Reactive Molecular Dynamics Simulations of Initial Reactions in Zeolite Synthesis
Z Jing, L Xin, H Sun
Physical Chemistry Chemical Physics, 2015
172015
Molecular Dynamics Study of the Hybridization between RNA and Modified Oligonucleotides
Z Jing, R Qi, M Thibonnier, P Ren
Journal of Chemical Theory and Computation 15 (11), 6422-6432, 2019
162019
Investigating the Association Mechanism between Rafoxanide and Povidone
F Meng, Z Jing, R Ferreira, P Ren, F Zhang
Langmuir 34 (46), 13971-13978, 2018
112018
Computational and Experimental Studies of Inhibitor Design for Aldolase A.
R Qi, B Walker, Z Jing, M Yu, G Stancu, R Edupuganti, KN Dalby, P Ren
The Journal of Physical Chemistry B 123 (28), 6034-6041, 2019
102019
Molecular dynamics free energy simulations of ATP:Mg2+ and ADP:Mg2+ using the polarisable force field AMOEBA
B Walker, Z Jing, P Ren
Molecular Simulation 47 (5), 439-448, 2021
92021
The system can't perform the operation now. Try again later.
Articles 1–20